Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12m14
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    37   0.002
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   7.1  

>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = +1

Query: 355 KVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLS 534
           ++ S   G +    ++   HLN+ G LHGG IA L D   + AL  +  +   GVSID++
Sbjct: 36  QIISAVPGFVECSLKLQKHHLNRMGNLHGGCIAALTDLGGSLAL-ASRGLFISGVSIDMN 94


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 87  FFLQLYITDFYILCSSLEIDINYLLKRLTNLA*NEYSKPI 206
           + +   I  F+I   + +I +  L K LTN+A N +++ +
Sbjct: 731 YLVHCEIDTFFIAAVAFKIQMLQLSKNLTNIAGNSWARTL 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,442
Number of Sequences: 5004
Number of extensions: 34807
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)