Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12m05
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    31   0.058
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   1.6  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   2.9  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   3.8  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    24   6.7  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    24   6.7  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    24   8.8  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    24   8.8  

>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 31.1 bits (67), Expect = 0.058
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 330 NND*NELQCINNRCIPHLLVGGPLASEFRCGDTRKGYHFLWRRP-ALRLFS 181
           N + +E +  +N  +P ++    +++ FR    +K YH+LW+   ALR+ S
Sbjct: 269 NCEHDEKKVADNLLVPQVMCSSNISTFFRSPGGKKLYHYLWKNSNALRISS 319


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 175 PPYLPIVPASLFLFCKQVPVLEHSFSMKIV-LISCFVGYESEITDERST 32
           P    I+  +LFL+CKQ+  +     M I  LIS  V + S +  E +T
Sbjct: 538 PATYEIILQNLFLWCKQLVEINFKDPMLITRLISVLVLFTSILARENTT 586


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -1

Query: 276 LVGGPLASEFRCGDTRKGYHFLWRRPALRLFSYYHRISR*YLLHYSYFVSRCRC 115
           L+ GPL    +  D RK   +LW  P   L  + H+  R  L   S F+    C
Sbjct: 280 LLCGPLIFVPKLWDVRKPATWLWLLPVFILSLFPHQEPRFLLPAASIFIVNSGC 333


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 181 LLPPYLPIVPASLFLFC 131
           +LP Y PI+P+S   FC
Sbjct: 428 MLPAYCPIIPSSEVNFC 444


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 216 FLWRRPALRLFSYYHRI 166
           F WR P L  + YY R+
Sbjct: 172 FFWRHPLLDPYKYYWRV 188


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 225 GYHFLWRRPALRLFSYYHRISR*YLLHYSYFVSRCRCWSTHFR 97
           GY FL R+P L   S + +     LLH   F S  +  S  FR
Sbjct: 624 GYKFLARKPHLVTVSIFGKDESYELLHICEFNSTRKRMSIVFR 666


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 39  RSSVISDSYPTKQDIRTIFIENEC-SSTGTCLQNRNSEAGTIGR 167
           +++ +S  Y T +  +   I     S++G CL+ R  +A  +GR
Sbjct: 23  KTTKLSIKYRTNEQSQNYLIAKAFESASGICLKYRTDKAAELGR 66


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 264 PLASEFRCGDTRKGYHFLWRRPALRLFSYYHRIS 163
           PL +E    D R+       RP   LF YY+ I+
Sbjct: 239 PLRAERNSPDFRRKLRSRDNRPNYHLFDYYNEIA 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,756
Number of Sequences: 5004
Number of extensions: 28377
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)