Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12m05
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310... 39 0.001
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 38 0.002
07_03_1148 - 24363952-24365086,24365178-24365361,24365438-243654... 28 2.0
04_03_0271 - 13694669-13694770,13694859-13694999,13695258-136953... 28 2.0
02_04_0592 - 24171698-24172285 28 2.0
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 28 2.7
11_03_0120 - 10255303-10255518,10256490-10256582,10256774-102568... 27 3.6
04_03_0641 + 18261332-18262423 27 3.6
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 27 3.6
04_03_0643 + 18328807-18331969,18332560-18332627 27 4.7
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398... 27 6.2
02_01_0490 + 3541056-3542276 27 6.2
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 26 8.2
>04_03_0813 -
19929562-19929798,19930209-19930580,19930686-19931039,
19931120-19931188,19931294-19931479,19932762-19932989,
19933655-19934020,19934154-19934354,19934923-19935093,
19935178-19935285,19935423-19935635,19936093-19936299,
19936485-19936586,19936714-19936902,19937766-19937933
Length = 1056
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/44 (54%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 139 GIVKQVLSGDTVVIR---KQPQGGPPPEKVIALSGITAPKLARQ 261
G VK V SGDTVVI K + PPPE + LS I AP LAR+
Sbjct: 16 GKVKSVPSGDTVVIMDTSKAEEVIPPPEMSVTLSCIIAPNLARR 59
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 139 GIVKQVLSGDTVVIRK--QPQGGPPPEKVIALSGITAPKLARQRTANK 276
G V +V++G +VI +P G P E+ + LS I PK + NK
Sbjct: 385 GKVIEVVNGYCLVIADDAEPYGSPSAERRVNLSSIRPPKFEKPSEENK 432
>02_04_0039 -
19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 139 GIVKQVLSGDTVVIRKQPQGG-PPPEKVIALSGITAPKLARQ 261
G VK V SGD ++I + PPPEK I LS + AP+LAR+
Sbjct: 13 GKVKGVTSGDCLLIMGSTKADVPPPEKSITLSYLMAPRLARR 54
Score = 35.5 bits (78), Expect = 0.013
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 139 GIVKQVLSGDTVVIRKQ--PQGGPPPEKVIALSGITAPKLARQRTANK 276
G V +V+SGD +++ P G P E+ + LS I APK+ R K
Sbjct: 383 GKVVEVVSGDCIIVADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEK 430
>07_03_1148 -
24363952-24365086,24365178-24365361,24365438-24365474,
24365585-24365818
Length = 529
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 278 YLLAVLWRASLGAVIPERAITFSGGGPP 195
Y A+LW +G V+ + A T GGG P
Sbjct: 386 YYGALLWHRLMGPVVLKAATTAGGGGSP 413
>04_03_0271 -
13694669-13694770,13694859-13694999,13695258-13695370,
13696253-13696304,13696538-13696660,13696985-13697091,
13697280-13697329,13698284-13698387,13698610-13698690,
13698829-13698913,13699370-13699446,13700587-13700676,
13701338-13701397,13701768-13701872,13701986-13702035,
13702174-13702280,13704735-13704805,13704916-13705144,
13705228-13705704,13705807-13706405
Length = 940
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 70 QNRISELFSSKMSXXXXXXXYKIGIVKQVLSGDTVVIRKQPQGGPPP 210
++R+S L S + S +KIG V S + + ++P PPP
Sbjct: 340 ESRLSRLASGRKSGRSSLMGFKIGKRSSVGSREAPAVVEEPAPAPPP 386
>02_04_0592 - 24171698-24172285
Length = 195
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -3
Query: 271 WRSFGERV*VR*YPKGLSLSLEAARPEAV----FLLPPYLPIVP 152
W S G+R Y KG + + A EA F LPP+LP++P
Sbjct: 67 WTSSGKRD----YIKGTAYKADPASDEAKLKVKFYLPPFLPVIP 106
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = -1
Query: 318 NELQCINNRCI------PHLLVGGPLASEFRCGDTRKGYHFL-WRRPA 196
NE C N C P ++GG ++ GDT+ Y +L W+ PA
Sbjct: 239 NETGCYNLACSGFIQTNPQFVIGGSISPVSTYGDTQYEYDYLVWKDPA 286
>11_03_0120 -
10255303-10255518,10256490-10256582,10256774-10256872,
10258145-10258264,10258345-10258467,10259933-10260046,
10261173-10261361,10263100-10263266,10263829-10263913,
10264176-10264370,10266251-10266436,10266575-10266614,
10267899-10267966
Length = 564
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 196 PEAVFLLPPYLPIVPASLFLFCKQV 122
PE ++LLP +LPI P + FC+ V
Sbjct: 178 PE-LWLLPHFLPIHPGRFWCFCRMV 201
>04_03_0641 + 18261332-18262423
Length = 363
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = -3
Query: 184 FLLPPYLPIVPASLFLFCKQVPVLE----HSFSMKIVL 83
FL+P Y+P+V L C+Q+ +L H FS VL
Sbjct: 225 FLMPAYMPVVKTILVESCRQLALLPIDELHRFSCLEVL 262
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 196 PEAVFLLPPYLPIVPASLFLFCKQV 122
P ++LLP +LPI P ++ C+ V
Sbjct: 263 PPEIWLLPYFLPIHPGRMWCHCRMV 287
>04_03_0643 + 18328807-18331969,18332560-18332627
Length = 1076
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 184 FLLPPYLPIVPASLFLFCKQVPVL 113
F +P Y+P V LFCK++ +L
Sbjct: 925 FFMPAYMPFVKTIDVLFCKELALL 948
>03_02_0875 +
12038365-12039329,12039417-12039593,12039651-12039893,
12040045-12040124,12040242-12040508,12040599-12040710,
12040757-12041071,12041357-12041366
Length = 722
Score = 26.6 bits (56), Expect = 6.2
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 51 ISDSYPTKQDIRTIFIENECSSTGTCLQNRNSEAGTIGRYGGNKKTASGRAASRESDS 224
I++++ + Q T +E+ SSTG + + S + GGNK ++G +R +DS
Sbjct: 556 ITNAFTSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVNGGNKADSAGE-VTRNADS 612
>02_01_0490 + 3541056-3542276
Length = 406
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 175 VIRKQPQGGPPPEKVIALSGITAPKLARQRTANK 276
++R QPQ PP A + + P+ A Q A +
Sbjct: 249 LVRSQPQPHPPAAAAAAAAAVAKPRAAIQSPARR 282
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 60 SYPTKQDIRTIFIENECSSTGTCLQNRNSEAGTIGRYGGNKKTASGR 200
S TK+D + + C+STG R+ G+ ++T+SGR
Sbjct: 175 SKSTKEDAEEGIVPSGCTSTGKEEDGRSCIGGSEAANKNEEQTSSGR 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,561,054
Number of Sequences: 37544
Number of extensions: 194207
Number of successful extensions: 594
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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