Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12l12
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   4.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 128 CSTITTSRVHHRVSSLLVIFYRLSLYPDHTN 220
           CS I+ + VH ++S +   F +     D  N
Sbjct: 104 CSPISDANVHIKISKIFQCFMKYKTITDILN 134


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 125 SCSTITTSRVHHRVSSLLVIFYRLSLYPDHTNDE*YFNY 241
           +CS I      +R+  L     +++ YP++ + E + NY
Sbjct: 283 NCSDILEEFERNRLQLLESFKRKVNFYPNNQDIEKFLNY 321


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 378 EPYQDVYFN 352
           EPY D++FN
Sbjct: 220 EPYPDIFFN 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,331
Number of Sequences: 438
Number of extensions: 2940
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)