Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12l10
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.27 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.48 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.48 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.48 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.5  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   5.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 LWHPEGVKEFVNVITYKGHRNFV 278
           LW  E  K +V +I   GHR+F+
Sbjct: 77  LWKFETAKYYVTIIDAPGHRDFI 99


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 LWHPEGVKEFVNVITYKGHRNFV 278
           LW  E  K +V +I   GHR+F+
Sbjct: 4   LWKFETSKYYVTIIDAPGHRDFI 26


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 LWHPEGVKEFVNVITYKGHRNFV 278
           LW  E  K +V +I   GHR+F+
Sbjct: 20  LWKFETSKYYVTIIDAPGHRDFI 42


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 LWHPEGVKEFVNVITYKGHRNFV 278
           LW  E  K +V +I   GHR+F+
Sbjct: 77  LWKFETSKYYVTIIDAPGHRDFI 99


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 172 SAYCPLQETEQQNFGIP 222
           SAY PL+E    ++G+P
Sbjct: 195 SAYTPLKEDHDDHYGVP 211


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 211 SFAVLSLEADNMQNSFVAATLRTSIECPFKIALNL*SGIAIVYLIIIWI 65
           SF VLS  A  +    ++     +I  P K  +       IVY+ ++W+
Sbjct: 119 SFDVLSCTASILNLCMISVDRFCAITKPLKYGVKRTPRRMIVYVSLVWL 167


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = -2

Query: 220 GCQSFAV---LSLEADNMQNSFVAATLRTSIECPFKIALNL*SGIAIVYLIIIWI 65
           GC  ++V   +S     M N+ +A     +I CP    LN      I+     W+
Sbjct: 128 GCDVYSVFGSISGMGQAMTNAAIAFDRYRTISCPIDGRLNSKQAAVIIAFTWFWV 182


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = -2

Query: 220 GCQSFAV---LSLEADNMQNSFVAATLRTSIECPFKIALNL*SGIAIVYLIIIWI 65
           GC  ++V   +S     M N+ +A     +I CP    LN      I+     W+
Sbjct: 128 GCDVYSVFGSISGMGQAMTNAAIAFDRYRTISCPIDGRLNSKQAAVIIAFTWFWV 182


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 468 NLNSIKSQNPCQVRHYKRRS 409
           N+N+   Q PC++ ++ +RS
Sbjct: 69  NINNQLFQTPCELLNFPKRS 88


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 474 YPNLNSIKSQNPCQVRHYKRRSRVLLASRELS 379
           +P  +  KS   CQ+ + + RSR L+ +  L+
Sbjct: 68  FPRSHRFKSLPRCQLSNKRDRSRELIKAAILA 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,886
Number of Sequences: 438
Number of extensions: 4428
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)