Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12l03
         (236 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   3.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   4.7  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 83  NDIGSFTTTIV--YIN*KQKNISVLKKKNC*LCRYSEATIENFIQGIICYKKK 235
           ND  SFTTT+   +     +NI  + K    L  Y E+    +I   I Y K+
Sbjct: 105 NDTVSFTTTVSARFWLMDCRNIGAVPKMATEL--YEESLFVPYITNFIIYSKR 155



 Score = 19.8 bits (39), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 60  SDLISFEVTISAR 98
           +D +SF  T+SAR
Sbjct: 105 NDTVSFTTTVSAR 117


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 88  IVTSKLMRSLYKLVAQFKLDSVSALRH 8
           +VT++ + S YK   +  + SV   RH
Sbjct: 288 VVTAQPVHSAYKAPEETIISSVFTTRH 314


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 232 FFITNNTLNKIFNGSFTI 179
           F  TN+ +N I  G+F I
Sbjct: 304 FACTNSCMNPIVYGAFNI 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,945
Number of Sequences: 438
Number of extensions: 580
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)