Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12l02
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.71 
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    27   1.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   2.9  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   3.8  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   3.8  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   5.0  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   6.6  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   8.8  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   8.8  

>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 459 PAKQQSNTVQQPVNSQNFNVPIPTNPS 539
           PA+   ++ Q+P  S  +NV +PT+P+
Sbjct: 88  PARHPQSSSQKPFASSTYNVELPTSPT 114


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 498 NSQNFN-VPIPTNPSFNLQFVNQKPQVFDCNSSSS 599
           + + +N +P+  N   N++F++Q P   + +SSSS
Sbjct: 426 DDEEYNGIPVDVNELLNVEFISQIPMSTETSSSSS 460


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 429 TNAQPNNLQTPAKQQSNTVQQPVNSQNFNVPI 524
           +N  P N  TP+  +S+T+ Q  +S + ++P+
Sbjct: 347 SNTPPRNTVTPSTARSSTLSQNPSSSSNSIPL 378


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 426 STNAQPNNLQTPAKQQSNTVQQPVNSQNFNV 518
           S+   P NL++PA     TV  P+ + N ++
Sbjct: 150 SSGGTPKNLRSPAIDSDGTVLAPIQTSNVDL 180


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 459 PAKQQSNTVQQPVNSQN-FNVPIPTNPSFNLQFVNQKPQVFDCNSSSSTKSQPQ 617
           P    + +V +P  S + F  P+ T+ +FN  F    PQ      ++++ + PQ
Sbjct: 373 PISYAAESVPRPATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVPQ 426


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 127 MLRHVYLKSKDRTLYKMDKITLN 195
           +L+ + L S D+ L+KMDK+  N
Sbjct: 328 ILKFLNLPSSDKALFKMDKVHTN 350


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 441 PNNLQTPAKQQSNTVQQPVNSQNFNVPIPTNPSFNLQF 554
           P N  TP K+ S+   Q  N  +FN P     SF   F
Sbjct: 670 PGNKCTPNKRDSHREPQTFNCDSFNEPGTEITSFLYDF 707


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 489 QPVNSQNFNVPIPTNPSFNLQFVNQKPQVFDCNSSSSTKS 608
           + V S NF VPI +NP F        P     N SS+ KS
Sbjct: 346 ESVASSNFQVPIISNPLFKSP-APYSPTSVISNHSSTGKS 384


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 426 STNAQPNNLQTPAKQQSNTVQQPVNSQNFNVPIPTNPSFNL 548
           S N  P N +T  +  SNT+    N QN ++   T    N+
Sbjct: 15  SINWIPKNTKTSIESVSNTISLSENGQNQDLETVTTKESNV 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,854
Number of Sequences: 5004
Number of extensions: 27499
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)