Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12l02
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0592 - 25327128-25329566                                         28   6.8  
07_01_0247 + 1813979-1814207,1815293-1815351,1815725-1815802,181...    28   6.8  

>11_06_0592 - 25327128-25329566
          Length = 812

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 501 SQNFNVPIPTNPSFNLQFVNQKPQVFDCNSSSSTKSQPQ 617
           S NF V +PT+    L+  +     F   +S+  K QPQ
Sbjct: 365 SDNFVVDLPTHLQLQLKIRHMVRSTFPATASAEEKQQPQ 403


>07_01_0247 +
           1813979-1814207,1815293-1815351,1815725-1815802,
           1816369-1816536,1816664-1817578
          Length = 482

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 441 PNNLQTPAKQQSNTVQQPVNSQNFNVPIPTNPSFNLQFVNQKP 569
           P N   P    +  VQQP+ +Q+  VP+ T   + ++F +Q P
Sbjct: 370 PQNTVAPPPMHAPLVQQPLTNQSSAVPLLT--QWQMRFGDQPP 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,628,405
Number of Sequences: 37544
Number of extensions: 169315
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)