Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12l02
         (617 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC005483-1|AAC83404.2|  484|Homo sapiens unknown protein.              32   1.4  
AF088705-1|AAC97260.1|   40|Homo sapiens T-cell receptor beta ch...    31   4.3  
U91935-1|AAB49728.1|  648|Homo sapiens retina-derived POU-domain...    30   5.7  
U91934-1|AAB49727.1|  684|Homo sapiens retina-derived POU-domain...    30   5.7  

>AC005483-1|AAC83404.2|  484|Homo sapiens unknown protein.
          Length = 484

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 429 TNAQPNNLQTPAKQQSNTVQQPVNSQNFNVPIPTNPSFNLQFVN 560
           +++Q  N  +P +Q S+  Q+P  S    +P P  P   LQ VN
Sbjct: 84  SHSQNQNQPSPTQQSSSPPQKPSQSPGHGLPSPLTPPNPLQLVN 127


>AF088705-1|AAC97260.1|   40|Homo sapiens T-cell receptor beta chain
           protein.
          Length = 40

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 28  LSDSSFYFCIQRTHTGSKAWKFST*ASMSSVVQMLRHVY 144
           LSDS FY C  R  TG+    F    S  +V++ L++V+
Sbjct: 1   LSDSGFYLCASRAGTGATGELFFGEGSRLTVLEDLKNVF 39


>U91935-1|AAB49728.1|  648|Homo sapiens retina-derived POU-domain
           factor-1 protein.
          Length = 648

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 429 TNAQPNNLQTPAKQQSNTVQQPVNSQNFNVPIPTNPSFNLQFVN 560
           +++   N  +P +Q S+  Q+P  S    +P P  P   LQ VN
Sbjct: 248 SHSHNQNQPSPTQQSSSPPQKPSQSPGHGLPSPLTPPNPLQLVN 291


>U91934-1|AAB49727.1|  684|Homo sapiens retina-derived POU-domain
           factor-1 protein.
          Length = 684

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 429 TNAQPNNLQTPAKQQSNTVQQPVNSQNFNVPIPTNPSFNLQFVN 560
           +++   N  +P +Q S+  Q+P  S    +P P  P   LQ VN
Sbjct: 248 SHSHNQNQPSPTQQSSSPPQKPSQSPGHGLPSPLTPPNPLQLVN 291


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,040,514
Number of Sequences: 237096
Number of extensions: 950496
Number of successful extensions: 3634
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3634
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)