Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12l02
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 39  FILLLYSKDSYGQQGLEI 92
           ++  +YS+ SYG+ G+E+
Sbjct: 140 YVSTVYSEGSYGEYGIEV 157


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 39  FILLLYSKDSYGQQGLEI 92
           ++  +YS+ SYG+ G+E+
Sbjct: 230 YVSTVYSEGSYGEYGIEV 247


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 438 QPNNLQTPAKQQSNTVQQPVNSQNFNVPIPTNPSFNLQ 551
           QP   Q   +QQ    + P+ + +FN  I    S + Q
Sbjct: 840 QPQQQQQQQQQQQQQQRGPMTNDDFNPNIEEEASDSAQ 877



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 456 TPAKQQSNTVQQPVNSQNFNVPI 524
           TPA Q  +   +P NSQ+ N+ +
Sbjct: 507 TPADQPLDLSAKPKNSQDNNISL 529


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/47 (19%), Positives = 25/47 (53%)
 Frame = +3

Query: 465 KQQSNTVQQPVNSQNFNVPIPTNPSFNLQFVNQKPQVFDCNSSSSTK 605
           K+++NT+++  +     +    +PS+++Q   Q   + D +   S++
Sbjct: 83  KRRTNTLRRGSDGSQLAMRNDRSPSYSMQVPQQGASIDDSDPDPSSE 129


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/47 (19%), Positives = 25/47 (53%)
 Frame = +3

Query: 465 KQQSNTVQQPVNSQNFNVPIPTNPSFNLQFVNQKPQVFDCNSSSSTK 605
           K+++NT+++  +     +    +PS+++Q   Q   + D +   S++
Sbjct: 531 KRRTNTLRRGSDGSQLAMRNDRSPSYSMQVPQQGASIDDSDPDPSSE 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,104
Number of Sequences: 438
Number of extensions: 2076
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)