Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12k19
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.66 
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   3.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.6  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 117 FLRSDAESTGNITCK 73
           FL SD+ S+GN+ CK
Sbjct: 93  FLSSDSASSGNVYCK 107


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 146 CQENLSTSVVFFVQTLNRP 90
           C E +ST++V   Q +N+P
Sbjct: 77  CVEKVSTTIVPTTQEINKP 95


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/40 (22%), Positives = 16/40 (40%)
 Frame = -2

Query: 230 FQPC*RRTSCSFQHSEQSTLLYCQTPSWCQENLSTSVVFF 111
           ++PC +   CS     ++   YC+        +S   V F
Sbjct: 101 YRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRF 140


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 349 EKERNVSFIILILAFVFYKVLLIGIAMASKT 441
           E+E+NVS + LI      K L +G  + +KT
Sbjct: 456 EREKNVSLLHLIFPPDIAKRLWLGETIEAKT 486


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 190 CWNEHEVRLQQGWKVAPE*FRI--*LS*MELKKAISDFV 300
           CWNEH+   +Q  ++  +  R    ++ M++K+ +  FV
Sbjct: 327 CWNEHQSLQRQNLEMVAQNDRTLQMIAGMKIKEELPHFV 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,259
Number of Sequences: 438
Number of extensions: 2472
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)