Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12k18
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   0.45 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   1.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   1.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.3  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 376 KFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRN 495
           K   K Y++ P+  K D +  L  ++  K  YK+N+  +N
Sbjct: 6   KLANKFYRISPQILKNDKRIYLSPRTPIKNVYKNNIETKN 45


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
 Frame = +1

Query: 343 RKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK--- 513
           R    D NR  K   + Y+    + +  L+     K   +   ++  SY+N  K+RK   
Sbjct: 2   RSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRE 61

Query: 514 --KSKNNTMSAAIATSERRIITSAIATLIYQDQSY 612
             K ++   +    + E +II+S     I+ + +Y
Sbjct: 62  RSKERSRDRTERERSREPKIISSLSNKTIHNNNNY 96


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
 Frame = +1

Query: 343 RKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK--- 513
           R    D NR  K   + Y+    + +  L+     K   +   ++  SY+N  K+RK   
Sbjct: 2   RSCSKDRNREYKEKDRRYEKLYNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRE 61

Query: 514 --KSKNNTMSAAIATSERRIITSAIATLIYQDQSY 612
             K ++   +    + E +II+S     I+ + +Y
Sbjct: 62  RSKERSRDRTERERSREPKIISSLSNKTIHNNNNY 96


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = +1

Query: 337 RARKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK- 513
           R R    D NR  K   + Y+    + +  L+     K   +   ++  SY+N  ++RK 
Sbjct: 233 RERSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKY 292

Query: 514 ----KSKNNTMSAAIATSERRIITSAIATLIYQDQSY 612
               K ++   +    + E +II+S     I+ + +Y
Sbjct: 293 RERSKERSRDRTERERSREPKIISSLSNKTIHNNNNY 329


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
 Frame = +1

Query: 337 RARKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK- 513
           R R    D NR  +   + Y+    + +  L+     K   +   ++  SY+N  ++RK 
Sbjct: 222 RERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNEREYRKY 281

Query: 514 ----KSKNNTMSAAIATSERRIITSAIATLIYQDQSY 612
               K ++        + E +II+S     I+ + +Y
Sbjct: 282 GKTSKERSRDRMERERSKEPKIISSLSNKTIHNNNNY 318


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 417 CVLWLYFIALQHKFTNSVRI 358
           CV+WL F+ L     N+V +
Sbjct: 858 CVIWLAFVPLYFGTGNNVAL 877


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +1

Query: 337 RARKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK 513
           R R    D NR  K   + Y+    + K  L+     K   +   ++  SY+N   +RK
Sbjct: 233 RERSCSRDRNREYKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQKSYKNENSYRK 291


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 487 SSHYLYNLLYIYFS 446
           S HYL  LLYI F+
Sbjct: 46  SLHYLLALLYILFT 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,437
Number of Sequences: 438
Number of extensions: 3477
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)