Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12k03
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po... 78 1e-15
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 31 0.12
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc... 31 0.16
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 29 0.87
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 28 1.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.6
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S... 26 4.6
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces... 26 4.6
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 26 6.1
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 25 8.1
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 8.1
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 8.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.1
>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 171
Score = 78.2 bits (184), Expect = 1e-15
Identities = 39/77 (50%), Positives = 51/77 (66%)
Frame = +2
Query: 323 VLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQYQRNKPSSTDELIFYCQ 502
VLIDVR PDE G I +S N+P+ ++E + +S+EEF K Y +KP D ++ YC+
Sbjct: 77 VLIDVREPDEFKQ-GAIETSYNLPVGKIEEAM-KLSDEEFSKTYGFSKPVFEDNVVVYCR 134
Query: 503 SGRRSTEALDIALKLGY 553
SGRRST A DI KLGY
Sbjct: 135 SGRRSTTASDILTKLGY 151
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 31.5 bits (68), Expect = 0.12
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Frame = +2
Query: 128 NIITGLQDKIYSLKFKKYFLPYNNNLHL----LGSIRLLVSDKKENKMVDPRRVVSYEDV 295
N+I + I+ +K + +F YN+ L++ L I +L D+ N+ + R E
Sbjct: 309 NLILQKRPSIFDVKTRVFFCKYNDPLYIKMEKLKIITMLACDENINETISELRAYVSEVE 368
Query: 296 LKVIHQPEKVLIDV--RNPDEVNTTGKIPSSI---NIPLNSVQEVLVSM 427
L+ + Q K L DV + P +N I I NI VQEV V M
Sbjct: 369 LEFVKQTIKCLGDVALKVPSVINDCISIFLEIYELNISY-MVQEVTVVM 416
>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 31.1 bits (67), Expect = 0.16
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 215 GSIRLLVSDKKENKMVDPRRVVSYEDVLKVIHQPEKVLIDVRNPDEVNTTGKIPSSIN 388
GSI LL + P V D +KV QP+ VL+++ + + T+GK+ S+++
Sbjct: 190 GSITLLFQRDAAGLEIRPPNFVKDMDWIKVNVQPDVVLVNIADMLQFWTSGKLRSTVH 247
>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
sulfurtransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 298
Score = 28.7 bits (61), Expect = 0.87
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 16/127 (12%)
Frame = +2
Query: 275 VVSYEDVLKVIHQPEKV---LIDVR-------NPDEVN---TTGKIPSSINIPLNSVQEV 415
V S++D++KVI P+ ++D R N E +G IP+SINIP
Sbjct: 162 VASFDDIVKVIESPDAAGVHIVDARAHERFLGNVPESRPGLASGHIPTSINIPFTETTAA 221
Query: 416 LVSMSNEEFKKQYQRNKPSSTDE---LIFYCQSGRRSTEALDIALKLGYSK*VKLFQVIK 586
++ E + + TD+ +I C SG + L ALK K V+++
Sbjct: 222 GITAPKPEEDLEKVFSSHGLTDKSVPIITSCGSG-VTASVLFAALKECGFKDVRVYDESW 280
Query: 587 GDHGQQS 607
+G+++
Sbjct: 281 SGYGKRA 287
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = +2
Query: 344 PDEVNTT--GKIPS----SINIPLNSVQEVLVSMSNEEFKKQYQR 460
P +NT K+PS ++ +P SVQE+++ E K+Q ++
Sbjct: 208 PSAINTATRSKLPSMRLTTVQVPSRSVQEIIIEKDPELLKRQAEK 252
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 299 KVIHQPEKVLIDVR---NPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQYQRNKP 469
K I + E DV PDE +T + ++IP L +++N +Q N+P
Sbjct: 10 KNIEEKENSFFDVTFQDEPDETTSTATGIAKVSIPTPKPSTPLSTLTNGSTIQQSMTNQP 69
Query: 470 SSTDEL 487
T ++
Sbjct: 70 EPTSQV 75
>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
Alg14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 74 QYHLLNYTDSTNNSFKAHNIITGLQDKIYSLK 169
Q HLL + S ++ + N++ L DK+YS++
Sbjct: 34 QKHLLVFFGSGGHTGEMLNLLNALDDKLYSVR 65
>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 200 NLHLLGSIRLLVSD--KKENKMVDPRRVVSYEDVLKVIHQP 316
NLH + +L + +ENK V P ++ Y D++K P
Sbjct: 70 NLHYIRDHGVLPTHLRNRENKNVAPEALIEYADIIKEFKAP 110
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 356 NTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQYQR 460
N +IP+S +I +S+ + L + S E +KQY++
Sbjct: 423 NIQREIPASDSIAWHSISKKLGTKSPESCRKQYEK 457
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 203 LHLLGSIRLLVSDKKENKMVDPRRVVSYEDVLKVI-----HQPEKVLIDVRNPDEVNTTG 367
+ LL + ++ + ++ +P R VS+ED ++ H P + +V +P+ +NT
Sbjct: 71 IDLLALVLPIIQELTWSRRKEPNRYVSFEDFIEHFDNMGPHYPR--VSEVLSPNLLNTLH 128
Query: 368 KIPSSINIPLNSV 406
+I +N P+ S+
Sbjct: 129 RI-CKVNEPVGSL 140
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 179 YFLPYNNNLHLLGSIRLLVSDKKENKMVDP 268
+FLP++ +HLL +LL+ DK+ N P
Sbjct: 640 FFLPFHFRIHLLQ--QLLLLDKQANGYAQP 667
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 53 IRPLCSIQYHLLNY-TDSTNNSFKAHNIITGLQDKIYSLKFKK 178
I +C ++ Y +DS +SFK ++ G D + +L FKK
Sbjct: 159 ILTVCGSSKKIMVYGSDSAISSFKLKAVLRGHLDWVRTLSFKK 201
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 317 EKVLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFK-KQYQRNKPSSTDELIF 493
++++ +V ++ + K N + +++ + NE + K+Y R K SS D ++
Sbjct: 54 DRIVTEVNYEQQLRNSEKKLLQSNERYDLLEDERKLLENELSQIKEYLREKSSSYDTVLH 113
Query: 494 YCQSGRRSTEAL 529
C S + EAL
Sbjct: 114 DCSSLKSVNEAL 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,700
Number of Sequences: 5004
Number of extensions: 58333
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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