Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12j10
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 392 RMTASYSEISFHSDQVQPDTQGKTAGPSRPYDLPSENRKQDKLPLDM 532
           R   S S+    S   +PD    ++  S P  + S  R +DK   DM
Sbjct: 572 RKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDM 618


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 15 YCKCKQCKLXXXXXSVLK 68
          YC C++CK+      V++
Sbjct: 3  YCTCEKCKITANRQQVMR 20


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 166 LRVIIKQYYCNNRKQNLAITE 104
           LR ++K+  C  RK+   ITE
Sbjct: 72  LRQLLKRQLCEKRKEVSIITE 92


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 377 HPFHLDFLVFLWYIFLLS 324
           +P  LDF VFL + F+ +
Sbjct: 272 YPTALDFFVFLSFAFIFA 289


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 256 YCFIVKEEYIPNNV 297
           +C+  ++EYIP N+
Sbjct: 458 WCWDTRKEYIPQNL 471


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 200 WKKSSPFYE*YPKGY 156
           W K++ FY+ YP+ +
Sbjct: 24  WWKNAIFYQVYPRSF 38


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 506 KQDKLPLDMDGHVR 547
           K D + LD DGH++
Sbjct: 112 KLDNVLLDQDGHIK 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,983
Number of Sequences: 438
Number of extensions: 3403
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)