Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12j06
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    26   1.2  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   2.1  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    25   2.8  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    24   3.7  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    24   4.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   4.9  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    24   4.9  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    24   4.9  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    24   4.9  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +2

Query: 50  RPPQHVAGVAWARCDGRRRPATSLGLWTGRATDVTRLD---DSRPDKRAYP*W 199
           RPPQH+ G   A+ D   R    L   T  A   +RLD   D    KRA+  W
Sbjct: 358 RPPQHIEGSEIAKVD---RAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 407


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 113 SLDAAGRRTGPTRPQP 66
           +LDA GRR  P +P+P
Sbjct: 44  ALDALGRRKAPIKPRP 59


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -3

Query: 99  RPSHRAHATPAT---CWGGRVARGYPGTV 22
           R +H  + T  T   CWG +V   YP T+
Sbjct: 124 RANHGPNVTIGTYGFCWGAKVLVTYPATI 152


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 141 ARPVQRPSDVAGRRRPSHRAHATPAT 64
           A+PV +P + A  ++PS      P T
Sbjct: 432 AQPVSKPKESAEEQKPSKEPEVKPTT 457


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 5    LGQRSGTVPGYPRATRPPQHVAGVAWARCDGRRRPATSLGLWTGRATDVTR 157
            LG +S T+ G PR TR  + + GV  A+  GR+ P   L    G    V++
Sbjct: 1574 LGAKS-TLMGLPRETRSHKSLGGV--AQTVGRKVPLIVLQPMIGATEAVSK 1621


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 16/62 (25%), Positives = 21/62 (33%)
 Frame = -3

Query: 201 PHYGYARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTV 22
           P+YG ++ S    S  VT   R      D      P    +       G R     P T+
Sbjct: 23  PNYGQSQYSYSAMSNLVTQADRRFVSRRDAEPTGEPESLVNRVSIADMGSRARIEKPSTL 82

Query: 21  PL 16
           PL
Sbjct: 83  PL 84


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = -3

Query: 150 TSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGT------VPLRCP 7
           ++++ P  R S      +PS +  +TPA      +   YPG+       P +CP
Sbjct: 300 SAISSPFVRKSSSDLEAKPSKKQRSTPAFSHDSPLTIDYPGSNLVVVDKPYKCP 353


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 44  ATRPPQHVAGVAWARCDGRRRPATSLGLW 130
           A  P   +AGV  ++C  +  P T L LW
Sbjct: 231 AVTPHGSLAGVTKSQCIAQMSPITYLVLW 259


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 102 RRPSHRAHATPATCWGGRVARGYPGTVPLRCPSA 1
           RR + R H +     G  +AR  P  VP   PSA
Sbjct: 238 RRRARRPHPSDTIPPGASMARSDPSQVPESNPSA 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,233
Number of Sequences: 5004
Number of extensions: 18810
Number of successful extensions: 47
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)