Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12j02
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 38 8e-04
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 36 0.004
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 34 0.013
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 32 0.051
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 32 0.067
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 31 0.12
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 30 0.27
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 29 0.63
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 0.83
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 27 1.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 1.9
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 4.4
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 26 4.4
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 5.9
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 7.7
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 38.3 bits (85), Expect = 8e-04
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 233 VILKDVSFTTHSGEVTAILGSKGSGKRALLDVIARRV-PSKGHVLLEGVPLEEEQFNINC 409
++L + S SG++TA++G+ GSGK ++ ++ R P G V L+G L +N
Sbjct: 436 LVLDNFSLVCPSGKITALVGASGSGKSTIIGLVERFYDPIGGQVFLDGKDLR----TLNV 491
Query: 410 ALVRHSTRLL 439
A +R+ L+
Sbjct: 492 ASLRNQISLV 501
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 35.9 bits (79), Expect = 0.004
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 239 LKDVSFTTHSGEVTAILGSKGSGKRALLDVIARRVPSKGHVLLEGVPL 382
L +VS + + E AI+G GSGK L++++ + PS+ + ++G PL
Sbjct: 1118 LNNVSLSIEAREKVAIVGISGSGKSTLVELLRKTYPSE-DIYIDGYPL 1164
Score = 35.5 bits (78), Expect = 0.005
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 239 LKDVSFTTHSGEVTAILGSKGSGKRALLDVIARRV-PSKGHVLLEGVPLEE 388
L +VS GE+ I+G GSGK + ++ R P+ G++ L+ PLEE
Sbjct: 452 LINVSVFIPFGELVHIIGPSGSGKSTFISLLLRYFSPTYGNIYLDDFPLEE 502
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 34.3 bits (75), Expect = 0.013
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 236 ILKDVSFTTHSGEVTAILGSKGSGKRALLDVIAR-RVPSKGHVLLEGVPL 382
I ++SF H G AI+ G GK + ++ R PS G +L +GV +
Sbjct: 499 IFDNLSFDIHPGTNVAIVAPSGGGKSTISQLLLRFYAPSSGKILADGVDI 548
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 32.3 bits (70), Expect = 0.051
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 179 QVEPGSF-FQRLTGGVKTGVILKDVSFTTHSGEVTAILGSKGSGKRALLD 325
+++ G+F + + T + L+ ++F +GE+T I G G+GK +LL+
Sbjct: 576 EIKSGTFSWSKKTLKQQVTPTLRQINFVAKNGELTCIFGKVGAGKSSLLE 625
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 31.9 bits (69), Expect = 0.067
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 179 QVEPGSFFQRLTGGVKTGVILKDVSFTTHSGEVTAILGSKGSGKRALLD 325
+++ G+F G L+D+ F GE+ I+G G GK +LL+
Sbjct: 579 EIKKGTFSWSGPGQNAAEPTLRDIDFVARRGELCCIVGKVGMGKSSLLE 627
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 233 VILKDVSFTTHSGEVTAILGSKGSGKRALLDVIARRV-PSKGHVLLEGV 376
++L D+S E I+G G+GK L + R + P+ G + L+ +
Sbjct: 1239 LVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPTSGDIQLDDI 1287
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 31.1 bits (67), Expect = 0.12
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +2
Query: 236 ILKDVSFTTHSGEVTAILGSKGSGKRALLDVIARRVPS---KGHVLLEGVPLEEEQFNIN 406
IL +VS +TA+LG SGK LL ++++R + +G + L G+ +
Sbjct: 776 ILTNVSGYLKKNTLTALLGENKSGKSVLLRILSQRGIAGSVEGEITLSGLK-NPKNLRKR 834
Query: 407 CALVRHSTRLLPGLSVQQTLAL 472
VR + + +V++TL L
Sbjct: 835 IGYVRKNPLFISEYTVRETLRL 856
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 29.9 bits (64), Expect = 0.27
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 236 ILKDVSFTTHSGEVTAILGSKGSGKRAL-LDVIARRVPSKGHVLLEGVPLEEEQFNINCA 412
ILKDV+ + E A++G GSGK L L ++ G + + G E + N+N
Sbjct: 1228 ILKDVNLHINPSEKVAVVGRTGSGKSTLGLTLLRFTHRISGEIYING--RETQSVNLNAL 1285
Query: 413 LVRHS 427
R S
Sbjct: 1286 RQRIS 1290
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 28.7 bits (61), Expect = 0.63
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 239 LKDVSFTTHSGEVTAILGSKGSGKRAL 319
LK+++FT + T ++GS GSGK L
Sbjct: 597 LKNLNFTIPRNQFTLVVGSTGSGKSTL 623
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 28.3 bits (60), Expect = 0.83
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 239 LKDVSFTTHSGEVTAILGSKGSGKRALLDVI-ARRVPSKGHV 361
L D+SF A++G G+GK L+ V+ +P+ G +
Sbjct: 690 LNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLPTVGEI 731
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 233 VILKDVSFTTHSGEVTAILGSKGSGKRALLD-VIARRVPSKGHVLLEGVPLEEEQFNIN 406
+++++ + + G+ +LG GSGK L+ V AR V H+ + E E ++N
Sbjct: 89 LLIENATIELNHGQRYGLLGDNGSGKSTFLESVAARDVEYPEHIDSYLLNAEAEPSDVN 147
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 306 PLPLDPSMAVTSPLCVVKDTSLRITPVFT 220
P PL P+M + S CV + L +P+FT
Sbjct: 208 PAPLSPAMDIFSLGCVFAELLLEESPLFT 236
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 188 PGSFFQRLTGGVKTGVILK--DVSFTTHSGEVTAILGSKGS 304
PGS LTG G ++ +V TT+ G T G GS
Sbjct: 289 PGSVTTTLTGAPSNGTVIDTVEVPTTTNYGYTTVTTGYTGS 329
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 188 PGSFFQRLTGGVKTGVILK--DVSFTTHSGEVTAILGSKGS 304
PGS LTG G ++ +V TT+ G T G GS
Sbjct: 367 PGSVTTTLTGAPSNGTVIDTVEVPTTTNYGYTTVTTGYTGS 407
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 188 PGSFFQRLTGGVKTGVILK--DVSFTTHSGEVTAILGSKGS 304
PGS LTG G ++ +V TT+ G T G GS
Sbjct: 601 PGSVTTTLTGAPSNGTVIDTVEVPTTTNYGYTTVTTGYTGS 641
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +2
Query: 188 PGSFFQRLTGGVKTGVILKDVSF--TTHSGEVTAILGSKGS 304
PGS LTG G ++ V TT+ G T G GS
Sbjct: 445 PGSVTTTLTGAPSNGTVIDTVEIPTTTNYGYTTITTGYTGS 485
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 188 PGSFFQRLTGGVKTGVILK--DVSFTTHSGEVTAILGSKGS 304
PGS LTG G ++ +V TT+ G T G GS
Sbjct: 523 PGSVTTTLTGAPSNGTVIDTVEVPTTTNYGYTTITTGYTGS 563
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 77 ILVLFIKNFCFKFFV*KMIGGDYTLELCNVFHS 175
+++ +K FCFK + ++GG + NVF S
Sbjct: 43 LILAIVKLFCFKAIIFPIVGGSFN-NGTNVFQS 74
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 281 AILGSKGSGKRALLDV-IARRVPSKGHV 361
AILG G+GK L+ V I +P +G V
Sbjct: 723 AILGPNGAGKSTLIKVLIGEVIPQEGKV 750
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 345 GTRRAITSRRARLPLPLDPSMAVTSPLCVVKD 250
G RRA+ +R R + LD + T P ++D
Sbjct: 106 GARRAVDARLRRRDIELDAAAGRTKPAAFLQD 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,099
Number of Sequences: 5004
Number of extensions: 42846
Number of successful extensions: 132
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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