Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12j02
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 FLF*IFCMKNDRWRLYFGAVQ 162
           F+  +FC+ + +WR+ F  +Q
Sbjct: 282 FILHLFCLLDVQWRIPFNGIQ 302


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 554 SQPAREPCQPSLV 516
           SQ A +PC PSL+
Sbjct: 45  SQQAGDPCDPSLL 57


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -1

Query: 405 LMLNCXXXXXXXXXSTWPFDGTRRAITSR 319
           + L C          TW  DG R + T R
Sbjct: 411 MFLKCVASGNPTPEITWELDGKRLSNTER 439


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 161 NVFHSGQVEPGSF 199
           N+ H  Q+EPG +
Sbjct: 541 NIIHFKQIEPGKY 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,354
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)