Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12j01
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 135 5e-33
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 48 1e-06
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 35 0.011
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 30 0.30
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 29 0.40
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 28 1.2
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 6.5
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 8.6
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 135 bits (326), Expect = 5e-33
Identities = 64/128 (50%), Positives = 89/128 (69%), Gaps = 2/128 (1%)
Frame = +2
Query: 227 WEKQQKKTFTAWCNSHLRKAGT-GIENIEDDFRNGLKLMLLLEVISGETLPKPDRG-KMR 400
W+ Q +TFT W N+ L + ++ D +G+ L+ LLE+I E L + +R +MR
Sbjct: 6 WQSVQNRTFTKWFNTKLSSRDLPSVFDLRKDLSDGILLIQLLEIIGDENLGRYNRNPRMR 65
Query: 401 FHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTA 580
H++ NVNKAL++I SKG+ L +IG +IVDGNLK+ LG+IWT+ILRF I DI+ E +TA
Sbjct: 66 VHRLENVNKALEYIKSKGMPLTNIGPADIVDGNLKLILGLIWTLILRFTIADINEEGLTA 125
Query: 581 KEGLLLWC 604
KEGLLLWC
Sbjct: 126 KEGLLLWC 133
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 48.0 bits (109), Expect = 1e-06
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Frame = +2
Query: 233 KQQKKTFTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETL--------PKPDR 388
+++ + FT W NS I + ++ R+GL L+ + I+ T+ P
Sbjct: 385 EREARVFTLWLNS--LDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGD 442
Query: 389 GKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII 535
MRF + N N A+D ++G LV I +I DG+ +TL ++W ++
Sbjct: 443 EMMRFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMM 491
Score = 35.5 bits (78), Expect = 0.006
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Frame = +2
Query: 311 DDFRNGLKLMLLLEVISGETLPKPDRGKMRFHK-------IANVNKALDFI-ASKGVKLV 466
D ++GL L L+ +T+ + K R +K I N N ++ A G+ +
Sbjct: 147 DQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISIT 206
Query: 467 SIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV 565
+IGA +I++G + LG++W II R + I +
Sbjct: 207 NIGAGDILEGREHLILGLVWQIIRRGLLGKIDI 239
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 34.7 bits (76), Expect = 0.011
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +2
Query: 308 EDDFRNGLKLMLLLEVISGETLPKPD-RGKMRFHKIANVNKALDFIASKGV-KLVSIGAE 481
E RNG+ L LL++ + L K +++F N+NK LDFI G+ ++
Sbjct: 66 EQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELT 125
Query: 482 EIVDG-NLKMTLGMIWTIILRFAIQDISVEEMTAKEGL 592
+I +G NL + I + ++QD++ + + E L
Sbjct: 126 DIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENL 163
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +1
Query: 253 HGMVQQSPQKSW-----HRHREHRGRLPQWLKAHAAAGGHLRRDSAQARPW 390
H +++ P+ +W H+HRE RG K+ GH +S Q W
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNSPQHATW 189
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 29.5 bits (63), Expect = 0.40
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +1
Query: 253 HGMVQQSPQKSW-----HRHREHRGRLPQWLKAHAAAGGHLRRDSAQARPW 390
H +++ P+ +W H+HRE RG K+ GH +S Q W
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNSPQHATW 189
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 206 HAPIPPL-VPCNRPGTTRHSCLSPRCPSSWSPH*PSIRCSFEPMTANSR 63
HAPIPPL VP + HS + SP+ P + S + + +++R
Sbjct: 265 HAPIPPLHVPAVPLTSASHSSSDGKSRKHPSPYKPYLNSSHDTLGSSTR 313
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 88 NEHRIDGQCGDHDDGQRGDKQL 153
+E I+ DHDDG+ D +L
Sbjct: 204 SESEIESSDSDHDDGENSDSKL 225
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 286 SFSEVTVAPCRECLFLLFLPGRV 218
++ +TVAP LFLL +P +V
Sbjct: 301 NWDNITVAPSTNVLFLLSVPSKV 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,305
Number of Sequences: 5004
Number of extensions: 43219
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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