Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12i07
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.1  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   1.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   4.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   7.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   7.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.5  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 54  H*NSDYQNEFYNNYLTN 4
           H N++Y N  YNNY  N
Sbjct: 91  HNNNNYNNNNYNNYNYN 107



 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 394 NCNNYGSYNY 423
           N NNY +YNY
Sbjct: 97  NNNNYNNYNY 106



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 48  NSDYQNEFYNNY 13
           N +Y N  YNNY
Sbjct: 103 NYNYNNNNYNNY 114


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 54  H*NSDYQNEFYNNY 13
           H N++Y N  YNNY
Sbjct: 91  HNNNNYNNNNYNNY 104


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 199 ACNLDYGLDALYQNPAT 249
           AC +D G   L+QNP T
Sbjct: 344 ACQMDSGGPVLWQNPRT 360


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 100 RLIPP*EQNRKPLVIPLELRLSERV 26
           RLI P   N   +V+ L LRLS+ +
Sbjct: 34  RLIRPVSNNNDTVVVKLGLRLSQLI 58



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 61  LKVFCFALMAVSDVAKAQCVNRMLPLQTSILPVSETVIPN 180
           L V  F L A S    A C+N +L      L +SE +IP+
Sbjct: 252 LSVLAFYLPADSGEKIALCINILLSQTMFFLLISE-IIPS 290


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 175 VLPFRKPAECLSAKVASDLRIVLWLRLIPP*EQNRKPLVIPLELRLSERV 26
           V PF   +    AK   D  +  + RLI P   N   L + + LRLS+ +
Sbjct: 9   VAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLI 58


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 231 IPEPCNHDHTGQHGREQPSQR 293
           +P+  N     Q+G EQP+ R
Sbjct: 58  VPQAANKGMINQYGGEQPTLR 78


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 48  NSDYQNEFYNNYLTN 4
           N++Y N + NNY  N
Sbjct: 98  NNNYNNNYNNNYNNN 112



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 48  NSDYQNEFYNNY 13
           N++Y N + NNY
Sbjct: 102 NNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 48  NSDYQNEFYNNYLTN 4
           N++Y N + NNY  N
Sbjct: 98  NNNYNNNYNNNYNNN 112



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 48  NSDYQNEFYNNY 13
           N++Y N + NNY
Sbjct: 102 NNNYNNNYNNNY 113


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 116 HCALATSDTAIRAKQKTFSDSIRTQTIRTS 27
           H    + D  +RAKQ  FSD      +++S
Sbjct: 299 HTKQLSHDVLLRAKQIGFSDKQIASVVKSS 328


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 54  H*NSDYQNEFYNNYLTN 4
           H N++Y N  YNN   N
Sbjct: 324 HNNNNYNNNNYNNNYNN 340


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 494 NIYLKYNKTIK 462
           NIY+++NK +K
Sbjct: 111 NIYIRFNKLVK 121


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 494 NIYLKYNKTIK 462
           NIY+++NK +K
Sbjct: 111 NIYIRFNKLVK 121


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 360 NDHVITTGQSI 328
           NDH +TT QS+
Sbjct: 820 NDHCVTTEQSV 830


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,051
Number of Sequences: 438
Number of extensions: 2728
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)