Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h13
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   2.6  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   4.5  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   5.9  

>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -3

Query: 381 VLRVFVLKMLFVSLRVRHLGLTNHTNMDKCLL 286
           +L +++ +ML  +LR+  +G  NHT ++KCLL
Sbjct: 418 ILWLWLFRML--NLRIASMG-NNHTLLEKCLL 446


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 305 TWTSAFCAAFFWSVALCPCCFFILD 231
           TW +AF   F  +  L  C F ILD
Sbjct: 442 TWRNAFFDEFIGTAVLVGCLFAILD 466


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 366 VLKMLFVSLRVRHLGLTNHTNMDKC 292
           ++++LF S++ R LG+  H+    C
Sbjct: 146 LVRLLFPSIKTRRLGMRGHSKYHYC 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,963
Number of Sequences: 5004
Number of extensions: 32714
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)