Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h13
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1342 + 29461083-29461365,29461991-29462029,29462257-29462285     34   0.069
04_01_0273 - 3631903-3632527,3633566-3633742,3633890-3634120,363...    30   0.85 
04_04_0157 + 23165638-23166633                                         28   4.5  
07_01_0104 + 796572-796644,796780-796820,797603-797722                 27   7.9  

>06_03_1342 + 29461083-29461365,29461991-29462029,29462257-29462285
          Length = 116

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 307 CVVCKAQMPDPKTYKQHFENKHPKNDL-PDDLKNI 408
           C +CK   PD K+ + H E +HPK    PD L N+
Sbjct: 49  CPLCKTTAPDIKSMQIHHEARHPKLPFEPDKLNNL 83


>04_01_0273 -
           3631903-3632527,3633566-3633742,3633890-3634120,
           3634431-3634636
          Length = 412

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 264 HRPEESCTKGTCPCLCGL*GPDA 332
           H P + CT G  P LCGL  P+A
Sbjct: 390 HAPNDRCTLGGVPVLCGLRKPNA 412


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 253 GHSATDQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPK 378
           GH       +A  A VH+C VC  +     T  +HF+  H +
Sbjct: 88  GHRLPAPSPSAAAAAVHLCRVCGRRFRARDTLLRHFDAIHAR 129


>07_01_0104 + 796572-796644,796780-796820,797603-797722
          Length = 77

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 271 QKKAAQKALVHVCVVCKAQM---PDPKTYKQHFENKHPKNDL 387
           Q +A +KA+   C +C             K+H E KHPK+DL
Sbjct: 27  QLEANKKAMNIQCKICMQTFICTTSETKCKEHAEAKHPKSDL 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,941,271
Number of Sequences: 37544
Number of extensions: 202149
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)