Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h13
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57972| Best HMM Match : Phage_integrase (HMM E-Value=0.85)          47   7e-06
SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)                    31   0.65 
SB_51629| Best HMM Match : NUMOD3 (HMM E-Value=9.8)                    27   8.0  
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.0  

>SB_57972| Best HMM Match : Phage_integrase (HMM E-Value=0.85)
          Length = 264

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 25/57 (43%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 KTTFSEQYTMARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVCK 321
           ++ F  + TMARGHQKI                 GH   DQKKAA KAL++ C VCK
Sbjct: 180 ESAFVLEVTMARGHQKIQSQQKNAEKKKKMEKAQGH---DQKKAASKALIYTCTVCK 233


>SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)
          Length = 545

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 12/54 (22%), Positives = 35/54 (64%)
 Frame = -3

Query: 438 IQI*MILIVLDILQVIW*IVLRVFVLKMLFVSLRVRHLGLTNHTNMDKCLLCSF 277
           I I +I++++ ++ +I  +++ ++V  ++F ++ +  + +T H ++  CLLC +
Sbjct: 239 IIIIIIIVIISMITIIISLIIIIYVTHIIF-NIIIIVINVTLHRSVSYCLLCDY 291


>SB_51629| Best HMM Match : NUMOD3 (HMM E-Value=9.8)
          Length = 337

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 253 GHSATDQKKAAQKALVHVCVVCKAQMPDPKTYKQ 354
           GH  TD K+  +   +H C  C+     PKT+K+
Sbjct: 304 GHKTTDVKETPK---LHACANCRRVEHAPKTFKK 334


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 325 QMPDPKTYKQ-HFENKHPKNDLPDDLKNI*HNQYH 426
           Q  DP+ Y+  HF+  HP  +  +D K I  +  H
Sbjct: 59  QQKDPRPYEAFHFDTTHPHENAENDKKTITSSTAH 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,088,293
Number of Sequences: 59808
Number of extensions: 240226
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)