Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h13
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16470.1 68418.m01925 zinc finger (C2H2 type) family protein ...    33   0.100
At3g26350.1 68416.m03287 expressed protein  ; expression support...    28   2.8  
At3g02790.1 68416.m00271 zinc finger (C2H2 type) family protein ...    27   5.0  
At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein ...    27   6.5  
At5g15900.1 68418.m01860 expressed protein several hypothetical ...    27   8.7  

>At5g16470.1 68418.m01925 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 104

 Score = 33.1 bits (72), Expect = 0.100
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 307 CVVCKAQMPDPKTYKQHFENKHPK 378
           C  CK  +PD KT + H E+KHPK
Sbjct: 49  CPHCKITVPDLKTMQIHHESKHPK 72


>At3g26350.1 68416.m03287 expressed protein  ; expression supported
           by MPSS
          Length = 356

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 305 TWTSAFCAAFFWSVAL 258
           TW++AFC A FW + +
Sbjct: 173 TWSAAFCCAIFWVILI 188


>At3g02790.1 68416.m00271 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 105

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 307 CVVCKAQMPDPKTYKQHFENKHP 375
           C  CK   P  KT + H E+KHP
Sbjct: 49  CPHCKITAPGLKTMQIHHESKHP 71


>At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 286

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 268 DQKKAAQKALVHVCVVCKAQMPDPKTYKQH 357
           D+ ++ Q    H CV+C+ Q    K Y  H
Sbjct: 38  DEDESPQPQRKHFCVICEKQFSSGKAYGGH 67


>At5g15900.1 68418.m01860 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 426

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
 Frame = -2

Query: 301 GQVPFVQLSSGRWHCAPAV--------SSFWTSFPQL*LVTEFSGVREPLCTAQK 161
           G   FV +SSG WH  P+V           +   P +  +T F G R+   TA K
Sbjct: 227 GDFDFVIISSGHWHYRPSVYYENRTITGCHYCQLPNITDLTMFYGYRKAFRTAFK 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,111,473
Number of Sequences: 28952
Number of extensions: 167127
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)