Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h12
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61240.2 68414.m06901 expressed protein contains Pfam profile...    29   1.6  
At1g61240.1 68414.m06900 expressed protein contains Pfam profile...    29   1.6  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    28   5.0  

>At1g61240.2 68414.m06901 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 425

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 436 FTKTKAP*IIFNSSCWFCSWNL 371
           F +  AP  +F+ S WFC+WNL
Sbjct: 271 FVEGMAP--VFSRSAWFCTWNL 290


>At1g61240.1 68414.m06900 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 425

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 436 FTKTKAP*IIFNSSCWFCSWNL 371
           F +  AP  +F+ S WFC+WNL
Sbjct: 271 FVEGMAP--VFSRSAWFCTWNL 290


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 497 ELSNPKLTQTDNPKAEVPKTE 559
           E SNPK  + ++PK E PKTE
Sbjct: 456 EPSNPKEPKPESPKQESPKTE 476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,482,745
Number of Sequences: 28952
Number of extensions: 155297
Number of successful extensions: 245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)