Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h11
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   5.5  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   5.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   5.5  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    25   7.3  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   7.3  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.6  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   9.6  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   9.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.6  

>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 193 PVQTVRGAFFKTYKTLQLIC 134
           P  ++RG F K Y+ L LIC
Sbjct: 422 PSPSLRGTFAKAYEMLTLIC 441


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 430 MFLFFNIHSFYWFLSFNFLFIDIA 359
           ++LF +IH FY F SF + +  +A
Sbjct: 171 IYLFLSIHLFYVFQSFPWTYFCLA 194


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 100 FPLQIFQLFTHFRKLYEYLIRTEYYP 23
           F L +F L  HF++  E   R  Y+P
Sbjct: 487 FYLMVFSLRAHFKQEIEVFFREVYFP 512


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -1

Query: 165 SRPTKPCSLSVTE-----AGKPSSGTVSHFKSFSFLLILGN 58
           S P++ C+L+++      AG  SS T+S   + S LL  GN
Sbjct: 118 SSPSQGCTLTISSQVPLGAGLGSSATISVVVATSLLLAFGN 158


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 458 SDVTPQDMLAWAEFQLP 508
           S+++PQD+L W  + LP
Sbjct: 30  SELSPQDILKWCRWTLP 46


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 427 FLFFNIHSFYWFLSFNFLFIDIAC 356
           FL   IH+ ++F++  F +I I+C
Sbjct: 319 FLLRQIHAAFFFVTICFTWISISC 342


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 106 NSFPLQIFQLFTHFRKLYEYLI 41
           NS P+ +  +F H+RKL   LI
Sbjct: 575 NSKPMSLGSMFEHYRKLARRLI 596


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 251 KSTKAQQPVKKLKLSNGFIVETCNTSTPSLSNEIATS 361
           ++++A    +  KL+   IVE+ + S PSL N+ +T+
Sbjct: 7   ETSRASSVEENPKLNIPEIVESVSDSKPSLKNQFSTT 43


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 257 TKAQQPVKKLKLSNGFIVETCNTSTPSLS 343
           TKA+Q  K +++    I  + +TS PSL+
Sbjct: 890 TKAEQARKSIEIDKAIIRNSQSTSRPSLT 918


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,668
Number of Sequences: 5004
Number of extensions: 28516
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)