Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h11
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025452-3|AAB70939.2|  198|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U80447-1|AAB37806.1|  746|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp...    27   8.8  
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical...    27   8.8  

>AF025452-3|AAB70939.2|  198|Caenorhabditis elegans Hypothetical
           protein B0454.5 protein.
          Length = 198

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 418 FNIHSFYWFLSFNFLFIDIACCYFIT 341
           +NI +F+ F S  +LF+ + CC  +T
Sbjct: 170 YNIATFFLFFSIFWLFMSVFCCCVLT 195


>Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical
           protein F36G9.3 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 433 FMFLFFNIHSFYWFLSFNFLFIDIA-CCYFI 344
           F F+F ++ S YW L+   +F  +A  C+FI
Sbjct: 382 FTFIFSSLISLYWVLTILSIFSILALICFFI 412


>U80447-1|AAB37806.1|  746|Caenorhabditis elegans Hypothetical
           protein F55F8.2a protein.
          Length = 746

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 476 DMLAWAEFQ-LPDSIMKALTEMGF 544
           D+ AW +F  LP+ +++A+ +MGF
Sbjct: 152 DISAWKQFYFLPNEVLEAIEQMGF 175


>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
            transporting ATPase protein.
          Length = 1121

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 88   FEVGNCSTRRLSSFRH 135
            F + NC+TRR+S FRH
Sbjct: 1030 FHLYNCTTRRVSVFRH 1045


>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
            protein Y105E8A.12a protein.
          Length = 1121

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 88   FEVGNCSTRRLSSFRH 135
            F + NC+TRR+S FRH
Sbjct: 1030 FHLYNCTTRRVSVFRH 1045


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,980,890
Number of Sequences: 27780
Number of extensions: 154382
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)