Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h11
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   8.2  
At3g62660.1 68416.m07039 glycosyl transferase family 8 protein l...    27   8.2  
At2g41180.1 68415.m05086 sigA-binding protein-related low simila...    27   8.2  

>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59   FP-KMSKKLKDLKWETVPLEGFPASVTDKLQ 148
            FP ++S  ++DLKW+  P+EG P  +  KL+
Sbjct: 2524 FPMRISHGVEDLKWQLCPIEG-PYRMRKKLE 2553


>At3g62660.1 68416.m07039 glycosyl transferase family 8 protein low
           similarity to glycosyl transferase lgtC - Neisseria
           gonorrhoeae, EMBL:AF208062; contains Pfam glycosyl
           transferase family 8 domain PF01501
          Length = 361

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 125 LESLLVEQFPTSNLSAFYSF*EIIRILNKNRVLSTLNQ 12
           LESL+   FP   L  +Y   EI+R L    V   L Q
Sbjct: 125 LESLIRSTFPELKLKVYYFDPEIVRTLISTSVRQALEQ 162


>At2g41180.1 68415.m05086 sigA-binding protein-related low
           similarity to SigA binding protein [Arabidopsis
           thaliana] GI:6980074; contains Pfam domain PF05678: VQ
           motif
          Length = 141

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 251 KSTKAQQPVKKLKLSNGFIVETCNTSTPSLSNEI 352
           KST   +P+K   +SN   VETC +    L  E+
Sbjct: 29  KSTTTHKPIKVRYISNPMRVETCPSKFRELVQEL 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,391,189
Number of Sequences: 28952
Number of extensions: 141228
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)