Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12h09
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 33 0.037
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 32 0.048
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo... 28 1.0
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.0
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 5.6
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 25 7.3
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 7.3
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 7.3
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.7
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 25 9.7
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 9.7
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 9.7
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 25 9.7
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 32.7 bits (71), Expect = 0.037
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 255 WNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEE 401
W KK S NL E G S K +PN + RA +++D DEE
Sbjct: 222 WFMKKESEENLAEAGSASPMYKLKTVPNARPVTGPRASGSDDELDYDEE 270
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 32.3 bits (70), Expect = 0.048
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 384 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRK 485
ID +E VET+ P KKE +K EK+ + +K++
Sbjct: 445 IDVEETVETISEKPSKKEKKDKKEKKKEKSKKKR 478
>SPBC1539.10 |||ribosome biogenesis protein Nop16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 189 RRRMNRKQKST--GNVQCSIVKEAWNNKKTSARNLREMGLVSDPN 317
RR N+K K+ GN ++++ W+ T +N +GL++ PN
Sbjct: 19 RRNANKKAKAKIYGNF---VIQQNWDKHATLRQNYARLGLLATPN 60
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +3
Query: 312 PNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAK 467
P +K + +++ V ++DS+E+ E+ P++E + +EK K
Sbjct: 36 PATVLKYLHEDSIYVEQPMNTVEEVDSEEDEESAPAYYPEREAIQLIEKAIK 87
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 5.6
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +3
Query: 207 KQKSTGNVQCSIVKEAWNNKKTSARN--LREMGLVSDPNKTI-KIPNFKQTQIQRAKQMV 377
K+KS G+ ++ A NK N +E + +D T P+ + ++ A + V
Sbjct: 324 KKKSKGSALMVDIEAADINKTEENINNQFQEASVTADNMNTWDNTPSVEN--VESANENV 381
Query: 378 NQIDSDEEVETVVRLPPKKEVAEKLEKQAKAP 473
N ++DE+++ ++ + A ++EK A+ P
Sbjct: 382 NNHNADEQMDEKIKSLVEGNSAYEIEKGAQEP 413
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 384 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRK 485
+ SD+ +E V + K+ A+KL +QAK R+ K
Sbjct: 175 LKSDDHMEKVRQELIKEATAKKLSQQAKKQRELK 208
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 387 DSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRK 485
D +E + PPK E+ K+E++ K K
Sbjct: 382 DESDEQNNCMSTPPKIEIESKIEEEISVVSKSK 414
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +3
Query: 348 TQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKG 503
+ + ++K+ + Q D+ E ++ KKE E + ++ + ++RK +G
Sbjct: 316 SHVHKSKEEIKQQDNFHEQSRALKEKRKKEQDENVRRKRENKKRRKDQKKEG 367
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 324 IKIPNFKQTQIQRAKQMVNQID---SDEEVETVVRLPPKKEVAEKL 452
IK+P+ T ++ AK ++ID VE + ++ K EV++ L
Sbjct: 457 IKVPHLPDTSVKTAKTGASEIDVLSRYPSVEEIDKITDKIEVSKPL 502
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 24.6 bits (51), Expect = 9.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 279 RNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEK 458
+N +G++ + K K + + + EE+E P +EV K EK
Sbjct: 56 KNFYMIGILREIRDGCKRSTIKAQDVWNKLGTLYNLKEFEELEA----PGNEEVKAK-EK 110
Query: 459 QAKAPRKRKFMLPK 500
+ K+P + F LPK
Sbjct: 111 RIKSPDVKDFKLPK 124
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 9.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 213 KSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTI-KIPNFKQTQIQRAKQMVNQID 389
+S GN Q S NN + ARN+R P+ ++ ++ N + A N I
Sbjct: 78 QSLGNTQISNPTSKTNNVRAKARNIRNPSQRLRPSTSLARLSNNAPRIPKEASLHENSIS 137
Query: 390 SDE 398
S E
Sbjct: 138 SKE 140
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/62 (20%), Positives = 32/62 (51%)
Frame = +3
Query: 306 SDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRK 485
+DP I K+ + AK+ DS+ E++ ++L +++ A + ++ + +++
Sbjct: 231 NDPELQRVIEESKRQAEEDAKRRNMANDSEAELQKAIQLSKEEDEARQRHQREREQQEQA 290
Query: 486 FM 491
FM
Sbjct: 291 FM 292
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 453 LISQLLPSLVEVLQLFPLLHLNRSGL 376
L+S++ P+L V +P+ L+RSGL
Sbjct: 216 LLSKIGPNLSSVCVQYPMPELSRSGL 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,975
Number of Sequences: 5004
Number of extensions: 34794
Number of successful extensions: 108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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