Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12h09
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190... 33 0.11
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 30 1.1
12_02_0927 + 24473634-24474236,24474464-24474518,24474579-24474952 30 1.4
06_03_0428 + 20692616-20692629,20692895-20693717 30 1.4
01_05_0031 + 17355791-17355920,17356341-17356675,17356762-17357109 30 1.4
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593 29 1.8
10_08_0332 - 16843295-16843356,16843884-16846656 29 3.2
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879... 29 3.2
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 28 5.6
07_03_1489 + 26933029-26933077,26933704-26933838,26934354-269344... 27 7.5
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 27 7.5
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 27 7.5
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 27 7.5
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 27 9.9
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 27 9.9
>11_03_0184 +
11317787-11318198,11318337-11318671,11318756-11319048,
11319125-11319483,11319549-11319748,11319823-11320012,
11320084-11320188,11320262-11320338,11320428-11320649
Length = 730
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 390 SDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQV 509
SD+E + R P +E +KL KQA PRK+ F P ++
Sbjct: 304 SDDEADDTTRKPGDRETTKKLPKQA-TPRKKTFSRPAPKI 342
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 372 MVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKA 470
+V Q DS++E E + R+ KK + K EK AKA
Sbjct: 521 VVEQSDSEDEREQLTRIAKKKADSGKKEKSAKA 553
>12_02_0927 + 24473634-24474236,24474464-24474518,24474579-24474952
Length = 343
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 390 SDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLP 497
SD+E + R P +E +KL KQA PRK+ P
Sbjct: 283 SDDEADDTTRRPGDRETTKKLPKQA-TPRKKTSSRP 317
>06_03_0428 + 20692616-20692629,20692895-20693717
Length = 278
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 312 PNKTIKIPNFKQTQIQRAKQMVNQIDSD---EEVETVVRLPPKKEV 440
P + P ++ RA +V Q+D D EE+E +V LPP E+
Sbjct: 161 PPPPLMPPQASPSEAARAHALVAQVDQDDDDEELEEIVELPPIDEL 206
>01_05_0031 + 17355791-17355920,17356341-17356675,17356762-17357109
Length = 270
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 390 SDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 482
SD+E + R P +E +KL KQA PRK+
Sbjct: 210 SDDEADDTTRRPEDRETTKKLPKQA-TPRKK 239
>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
Length = 1278
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 438 LPSLVEVLQLFPLLHLNRSGLPFVSPFEFESV*NLVFL*FCLDHLQDPFPLDF 280
+P ++ LQ+ L + SGL P + ++ NL+F L+ L P +F
Sbjct: 301 IPPVLGQLQMLQRLDIKNSGLSSTLPSQLGNLKNLIFFELSLNQLSGGLPPEF 353
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 438 LPSLVEVLQLFPLLHLNRSGLPFVSPFEFESV*NLVFL*FCLDHLQDPFPLDF 280
+P ++ LQ+ L + SGL P + ++ NL+F L+ L P +F
Sbjct: 307 IPPVLGRLQMLQRLDIKNSGLVSTLPSQLGNLKNLIFFELSLNRLSGGLPPEF 359
>01_01_1111 -
8791925-8792649,8793506-8793890,8794341-8794618,
8794998-8795163
Length = 517
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 315 LDHLQDPFPLDFEQKFFYYSMLP*QLNIERSLYFFVSYSYAVDLTCV 175
L+ L DPF D EQ + P + N+E S+ FF +AV C+
Sbjct: 237 LNELFDPF-FDPEQSLASADLSPDEQNVESSVSFFTVTVFAVLSLCI 282
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 285 LREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPK 431
+ E G+ DPNK KI +FK ++ Q + I + EV V +P K
Sbjct: 311 VHERGVEIDPNKIEKIRDFKAPTCKKEVQKLLNIAYEGEVFLVEVIPWK 359
>07_03_1489 +
26933029-26933077,26933704-26933838,26934354-26934478,
26934558-26934626,26934730-26934798,26935095-26935157,
26935280-26936533
Length = 587
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +3
Query: 264 KKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVA 443
K +S N++ + +K I++ + ++++ I E+E + KK+ A
Sbjct: 68 KASSLDNVKAQCHMILEDKRIELKEYLNDLCHDKHKVIDNICKKYELENIEITNAKKQKA 127
Query: 444 EKLEKQAKAPRKRKFMLPKGQ 506
EKL ++ K +K +PK Q
Sbjct: 128 EKLSREMKNKCNKK--MPKSQ 146
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 387 DSDEEVETVVRLPPKKEVAEKLEK-QAKAP 473
D +EE E ++ LPP + +A K+E+ A AP
Sbjct: 98 DEEEEEEMMMMLPPHEWLARKMERMNAAAP 127
>03_02_1012 + 13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3
Query: 336 NFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQ 506
++ TQ Q+A +++ +EV TV RL K + EK+ ++AK + ++ KG+
Sbjct: 1235 DWNPTQDQQAMDRTHRLGQTKEV-TVYRLICKDTIEEKILQRAKQKNAVQELVMKGK 1290
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 294 MGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAP 473
+GL+S + IKI +++ Q+V D ++++ V+ L P+K + + K
Sbjct: 235 LGLIS---QIIKIQLLADLNLKKTPQLVELFDDSKDIDEVLSLSPEKMLLRWMNHHLKKA 291
Query: 474 RKRK 485
+K
Sbjct: 292 GYKK 295
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 438 LPSLVEVLQLFPLLHLNRSGLPFVSPFEFESV*NLVFL*FCLDHLQDPFP 289
+P+ + LF +L+L + L P S+ NL FL +HL P P
Sbjct: 481 IPNCIASNHLFFILNLRGNHLTGSIPTGLSSLLNLQFLDLSKNHLSGPLP 530
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 294 MGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAK 467
+GL+S + IKI ++ Q+V ++ +E+E ++ L P+K + + Q K
Sbjct: 262 LGLIS---QIIKIQLLADVNLKSTPQLVELVEDSKEMEELMSLSPEKILLRWMNFQLK 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,566,031
Number of Sequences: 37544
Number of extensions: 188411
Number of successful extensions: 497
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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