Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h09
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42728| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_7392| Best HMM Match : Ricin_B_lectin (HMM E-Value=4.6e-32)         32   0.36 
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_22633| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_49742| Best HMM Match : Dam (HMM E-Value=5.8)                       30   1.4  
SB_45378| Best HMM Match : DUF843 (HMM E-Value=4.7)                    30   1.4  
SB_17041| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_29782| Best HMM Match : RnaseH (HMM E-Value=0.15)                   29   3.3  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       29   3.3  
SB_30333| Best HMM Match : DUF1168 (HMM E-Value=3.6)                   29   3.3  
SB_20802| Best HMM Match : Phage_integr_N (HMM E-Value=1.2)            28   4.4  
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_29723| Best HMM Match : EGF_2 (HMM E-Value=0.55)                    28   5.8  

>SB_42728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +3

Query: 249 EAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPP 428
           E W  K  + ++L    L   PNK ++I +F+ T + +  ++  Q    E    V   P 
Sbjct: 47  ETWKPKSKNTKHLDSHELSIPPNKLLRIQDFQSTYVTQIPRIAQQ---GENGAKVFNSPS 103

Query: 429 KKEVAEK 449
           +KE+ ++
Sbjct: 104 EKEIEKE 110


>SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 378 NQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRK 485
           NQ D DE+ ET       +E+A+ LEK  K P KR+
Sbjct: 84  NQTDQDEDEETNSFKITAEEIAKNLEKYKKRPAKRQ 119


>SB_7392| Best HMM Match : Ricin_B_lectin (HMM E-Value=4.6e-32)
          Length = 594

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +3

Query: 249 EAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPP 428
           E W  K  + ++L    L   PNK ++I +F+ T + +  ++  Q    E    V   P 
Sbjct: 23  ETWKPKSKNTKHLDSHELSIPPNKLLRIQDFQSTYVTQIPRIAQQ---GENGAKVFNSPS 79

Query: 429 KKEVAEK 449
           +KE+ ++
Sbjct: 80  EKEIEKE 86


>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3038

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
 Frame = +3

Query: 192  RRMNRKQKSTG---NVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQ----T 350
            R++ ++ K  G   N +C   K+     K     + E G+ +DP KT  I +F +    T
Sbjct: 2388 RKVLQRLKDAGVTLNEKCEFSKQ---RMKFLGHVISEDGVEADPEKTKAIQDFPRPTTVT 2444

Query: 351  QIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPK 500
            ++QR   MVNQ+         +  P ++ +A++ +     P++R F   K
Sbjct: 2445 ELQRFNGMVNQLAKFIPDLATINEPLRQLLAKEQQWLWDQPQERAFQAIK 2494


>SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
 Frame = +3

Query: 192 RRMNRKQKSTG---NVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQ----T 350
           R++ ++ K  G   N +C   K+     K     + E G+ +DP KT  I +F +    T
Sbjct: 156 RKVLQRLKDAGVTLNEKCEFSKQ---RMKFLGHVISEDGVEADPEKTKAIQDFPRPTTVT 212

Query: 351 QIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPK 500
           ++QR   MVNQ+         +  P ++ +A++ +     P++R F   K
Sbjct: 213 ELQRFNGMVNQLAKFIPDLATINEPLRQLLAKEQQWLWDQPQERAFQAIK 262


>SB_22633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = +3

Query: 204 RKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQ 383
           R +K  G ++       W +++   R LRE        KT+++       I RA +   +
Sbjct: 172 RFEKKYGKMEDETQLYEWVDEEEEERKLRERR-----EKTLRL----NAHIWRA-EAERK 221

Query: 384 IDSDEEVETVVRLPPKKEVAEKL--EKQAKAPRKRKFML 494
            + +E  E    L  K+E+ E+L  EK+ K  +KRKF L
Sbjct: 222 TEEEESAEKEKALRRKQELEERLKREKEKKMMKKRKFSL 260


>SB_49742| Best HMM Match : Dam (HMM E-Value=5.8)
          Length = 219

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 249 EAWNNKKTSARNLREMGLVSDPNKTIKIP 335
           E WNN K +    R +G +  P K++ IP
Sbjct: 75  ECWNNVKETVSLFRRLGFIIHPEKSVFIP 103


>SB_45378| Best HMM Match : DUF843 (HMM E-Value=4.7)
          Length = 228

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 249 EAWNNKKTSARNLREMGLVSDPNKTIKIP 335
           E WNN K +    R +G +  P K++ IP
Sbjct: 98  ECWNNVKETVSLFRRLGFIIHPQKSVFIP 126


>SB_17041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/76 (27%), Positives = 39/76 (51%)
 Frame = +3

Query: 189 RRRMNRKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAK 368
           RR+ ++K+K+    +C+ VK+A  NKK + +   E    S    TIK  N ++   ++ K
Sbjct: 66  RRKSDKKEKAKDPRECN-VKKATRNKK-AKKEKSEKSHFSFKVNTIKNTNAEKVNKKKRK 123

Query: 369 QMVNQIDSDEEVETVV 416
             + Q  S +   ++V
Sbjct: 124 DRILQKKSSQPDPSIV 139


>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 363 AKQMVNQIDSDE-EVETVVRLPPKKEVAEKLEKQAKAPRKRK 485
           +K+ +NQ D  + + E ++++  KK+  +K++K+ K  +K+K
Sbjct: 1   SKREINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKK 42


>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/52 (25%), Positives = 31/52 (59%)
 Frame = +3

Query: 324 IKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRK 479
           +++   K+ + ++  +   ++++++EVET   +  KKEV  + EK+ +  RK
Sbjct: 25  MEVETEKEVETEKEVETEKEVETEKEVETEKEVETKKEV--ETEKEVEGSRK 74


>SB_29782| Best HMM Match : RnaseH (HMM E-Value=0.15)
          Length = 781

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 249 EAWNNKKTSARNLREMGLVSDPNKTIKIP 335
           E WNN K +    + +G +  P+K++ IP
Sbjct: 327 ECWNNVKETVSLFQRLGFIIHPDKSVFIP 355


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 333  PNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVA 443
            P F + + Q A  +V + DS+ E+  VVR  PK EVA
Sbjct: 4647 PFFPEDEGQGAVPVVTRQDSEVELGAVVRGSPKPEVA 4683


>SB_30333| Best HMM Match : DUF1168 (HMM E-Value=3.6)
          Length = 213

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
 Frame = +3

Query: 186 NRRRMNRKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRA 365
           N+  +  + +   ++Q  +V +    +K  ARN +   L S    + +    K T +++A
Sbjct: 69  NQTNIEARSEQATDIQLPVVVK--EKRKDQARNSKPKVLDSLFGPSSRKATGK-TVVEKA 125

Query: 366 KQ--MVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 482
           KQ  + ++ DS+   +T+V     K+V +K  KQ    R R
Sbjct: 126 KQEKLQSRKDSERPPKTIVPRQDGKQVTDKKGKQRPTRRNR 166


>SB_20802| Best HMM Match : Phage_integr_N (HMM E-Value=1.2)
          Length = 566

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 249 EAWNNKKTSARNLREMGLVSDPNKTIKIP 335
           E WNN K +    + +G +  P K++ IP
Sbjct: 98  ECWNNVKETVSLFQRLGFIIHPEKSVFIP 126


>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 REMGLVSDPNKTIKIPNFKQTQIQ 359
           RE G+  DP+ T K+P  + TQ Q
Sbjct: 250 REAGITEDPHGTSKLPRRRSTQTQ 273


>SB_29723| Best HMM Match : EGF_2 (HMM E-Value=0.55)
          Length = 319

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 401 FFI*IDLVYHLFRPLNLSLFEIWYFYSF 318
           +F+ + L++H+ + L +S FE + FY F
Sbjct: 9   WFVYVALLWHIVQVLRVSAFESYLFYDF 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,945,758
Number of Sequences: 59808
Number of extensions: 231396
Number of successful extensions: 723
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)