Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12h09
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81143-4|CAB03516.1| 189|Caenorhabditis elegans Hypothetical pr... 48 4e-06
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ... 32 0.24
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ... 32 0.24
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 0.72
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 0.72
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 31 0.72
U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine d... 30 0.95
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p... 30 1.3
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical... 29 2.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.9
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 28 3.9
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 28 3.9
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 28 3.9
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 28 3.9
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 28 5.1
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 27 6.7
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 6.7
U21323-8|AAA62552.1| 294|Caenorhabditis elegans Hypothetical pr... 27 6.7
U10402-6|AAV34793.1| 360|Caenorhabditis elegans Tryptophanyl (w... 27 6.7
U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w... 27 6.7
AL032645-1|CAA21674.1| 123|Caenorhabditis elegans Hypothetical ... 27 6.7
AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical ... 27 6.7
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 6.7
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 6.7
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 6.7
AB096634-1|BAC76734.1| 360|Caenorhabditis elegans tryptophanyl-... 27 6.7
>Z81143-4|CAB03516.1| 189|Caenorhabditis elegans Hypothetical
protein ZK265.6 protein.
Length = 189
Score = 48.0 bits (109), Expect = 4e-06
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Frame = +3
Query: 189 RRRMNRKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAK 368
+++ N+K+ S V I+K W+ KT N+R+MG+ +PN + I ++ I
Sbjct: 24 KKKDNKKKLSKSAVP--IIKYTWDETKTPRENVRDMGIAFNPNDAVPIAEHRKEIIDAEP 81
Query: 369 -QMVNQIDSDEEVETVVRLPPKKEVAE---------KLEKQAKAPRKRKFMLPKGQVEFI 518
V+ + E + R +K+ A K E++A+A + RKF L + E
Sbjct: 82 IDGVSIVVPKPEKKVTGRKKNEKQAAHIISNLEQQVKEEEEARAGQDRKFRLFHRETELC 141
Query: 519 TYLLXXYGND 548
Y+L +G D
Sbjct: 142 VYMLARHGED 151
>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
protein Y38E10A.6b protein.
Length = 1345
Score = 32.3 bits (70), Expect = 0.24
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +3
Query: 213 KSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQID- 389
K G+ I ++A ++K L ++ P K+ KIP K +I+ ++ + +
Sbjct: 885 KKNGSETAEIAEKAQISEKKPVNRLVIDEVLKSPQKSEKIPE-KAQEIEEIEESPKKSEK 943
Query: 390 SDEEVETVVRLPPKKEVA-EKLEKQAKAPRK 479
+ E+ + + +P K E A EK ++ K+P+K
Sbjct: 944 APEKPQEIQEIPKKSEKAPEKPQEIEKSPKK 974
>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
protein Y38E10A.6a protein.
Length = 1343
Score = 32.3 bits (70), Expect = 0.24
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +3
Query: 213 KSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQID- 389
K G+ I ++A ++K L ++ P K+ KIP K +I+ ++ + +
Sbjct: 883 KKNGSETAEIAEKAQISEKKPVNRLVIDEVLKSPQKSEKIPE-KAQEIEEIEESPKKSEK 941
Query: 390 SDEEVETVVRLPPKKEVA-EKLEKQAKAPRK 479
+ E+ + + +P K E A EK ++ K+P+K
Sbjct: 942 APEKPQEIQEIPKKSEKAPEKPQEIEKSPKK 972
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 30.7 bits (66), Expect = 0.72
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 366 KQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLP 497
++ V+Q+D E++E V + PK EV + ++ + KR +LP
Sbjct: 1859 QKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILP 1902
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 30.7 bits (66), Expect = 0.72
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 366 KQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLP 497
++ V+Q+D E++E V + PK EV + ++ + KR +LP
Sbjct: 1859 QKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILP 1902
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 30.7 bits (66), Expect = 0.72
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 366 KQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLP 497
++ V+Q+D E++E V + PK EV + ++ + KR +LP
Sbjct: 1859 QKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILP 1902
>U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine dna
alkyltransferaseprotein 2 protein.
Length = 274
Score = 30.3 bits (65), Expect = 0.95
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 414 VRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQ 506
V+ PPKK + +K++K +AP+ K KG+
Sbjct: 199 VKSPPKKMIIQKIQKHQEAPKPAKVPKIKGE 229
>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical protein
ZK524.2d protein.
Length = 2155
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 189 RRRMNRKQKSTGNVQCSIVKEAWNNKKTS-ARNLREMGLVSDPNKTIKIPNFKQTQIQRA 365
RRR ++ K + C I+ W +KT + M + P KT+ P K+ +I R
Sbjct: 862 RRRKRKRVKIKKSRSCPIL---WKTEKTPHPMKSKSMTCIRIPKKTVIAPLRKEIKIVRM 918
Query: 366 KQMVNQIDSDEE 401
K + +SD +
Sbjct: 919 KPPAARCESDSK 930
>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 189 RRRMNRKQKSTGNVQCSIVKEAWNNKKTS-ARNLREMGLVSDPNKTIKIPNFKQTQIQRA 365
RRR ++ K + C I+ W +KT + M + P KT+ P K+ +I R
Sbjct: 862 RRRKRKRVKIKKSRSCPIL---WKTEKTPHPMKSKSMTCIRIPKKTVIAPLRKEIKIVRM 918
Query: 366 KQMVNQIDSDEE 401
K + +SD +
Sbjct: 919 KPPAARCESDSK 930
>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical protein
ZK524.2d protein.
Length = 2155
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 189 RRRMNRKQKSTGNVQCSIVKEAWNNKKTS-ARNLREMGLVSDPNKTIKIPNFKQTQIQRA 365
RRR ++ K + C I+ W +KT + M + P KT+ P K+ +I R
Sbjct: 862 RRRKRKRVKIKKSRSCPIL---WKTEKTPHPMKSKSMTCIRIPKKTVIAPLRKEIKIVRM 918
Query: 366 KQMVNQIDSDEE 401
K + +SD +
Sbjct: 919 KPPAARCESDSK 930
>AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical
protein F45C12.3 protein.
Length = 470
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 285 LREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQA 464
L E ++ PN+ ++ ++ Q + + + D++++ P + E EKLEK
Sbjct: 268 LEEAEILEKPNEPMESETLERHQQLEKNEEPREYEEDKKLKE----PGEHEETEKLEKPN 323
Query: 465 KAPRKRKFM 491
K +KFM
Sbjct: 324 KLENSKKFM 332
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 336 NFKQT-QIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 482
N K+T +++ AK+ Q + DE+++ + KK AEKLE + +A K+
Sbjct: 13018 NIKKTAEVEAAKK---QKEKDEQLKLETEVVSKKSAAEKLELEKQAQIKK 13064
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 342 KQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRK 479
K+ Q+ +++ Q D DE+ T PPK E +E K+ +K
Sbjct: 13698 KRDPAQKTEEISKQDDGDEKKTTTDGKPPKPEDSEATPKKRVVKKK 13743
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 336 NFKQT-QIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 482
N K+T +++ AK+ Q + DE+++ + KK AEKLE + +A K+
Sbjct: 13018 NIKKTAEVEAAKK---QKEKDEQLKLETEVVSKKSAAEKLELEKQAQIKK 13064
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 342 KQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRK 479
K+ Q+ +++ Q D DE+ T PPK E +E K+ +K
Sbjct: 13698 KRDPAQKTEEISKQDDGDEKKTTTDGKPPKPEDSEATPKKRVVKKK 13743
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 264 KKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVR---LPPKK 434
+K+SA+N ++ + SD K K + + K + D DEE E V + P+
Sbjct: 75 RKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKAQESSEDDDEESEGDVSEEDVKPQI 134
Query: 435 EVAEKLEKQAKAP 473
++LE++ +AP
Sbjct: 135 HSDDELEEEDEAP 147
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 264 KKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVR---LPPKK 434
+K+SA+N ++ + SD K K + + K + D DEE E V + P+
Sbjct: 75 RKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKAQESSEDDDEESEGDVSEEDVKPQI 134
Query: 435 EVAEKLEKQAKAP 473
++LE++ +AP
Sbjct: 135 HSDDELEEEDEAP 147
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/81 (23%), Positives = 41/81 (50%)
Frame = +3
Query: 243 VKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRL 422
VK++ NK+ S + E SD ++ + K + + + ++ + ++EV+ +
Sbjct: 165 VKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKSKK- 223
Query: 423 PPKKEVAEKLEKQAKAPRKRK 485
KK V ++ E + +AP K+K
Sbjct: 224 KSKKVVKKESESEDEAPEKKK 244
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/81 (23%), Positives = 41/81 (50%)
Frame = +3
Query: 243 VKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRL 422
VK++ NK+ S + E SD ++ + K + + + ++ + ++EV+ +
Sbjct: 165 VKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKSKK- 223
Query: 423 PPKKEVAEKLEKQAKAPRKRK 485
KK V ++ E + +AP K+K
Sbjct: 224 KSKKVVKKESESEDEAPEKKK 244
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 306 SDPNKTIKIPNFKQTQIQRAKQMVNQID-SDEEVETVV 416
S +K KIP+ Q+++ AK+ ++QID D+E + V
Sbjct: 1242 SASSKRSKIPSTSQSRVGSAKKQISQIDEQDKEPDVFV 1279
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 264 KKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVR---LPPKK 434
+K+SA+N ++ + SD K K + + K + D DEE E V + P+K
Sbjct: 75 RKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKAQESSEDDDEESEGDVSEEDVKPQK 134
Query: 435 EVAEKLEKQAKAPRKR 482
++ EK + K+
Sbjct: 135 RKSKGAEKSKPSTSKK 150
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 348 TQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAK 467
T Q AKQ +N++ D EVE V KK E E+ K
Sbjct: 791 TSTQNAKQKMNELFLDVEVEFVQSFYNKKPEEEPFEQFVK 830
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 348 TQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAK 467
T Q AKQ +N++ D EVE V KK E E+ K
Sbjct: 791 TSTQNAKQKMNELFLDVEVEFVQSFYNKKPEEEPFEQFVK 830
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 348 TQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAK 467
T Q AKQ +N++ D EVE V KK E E+ K
Sbjct: 791 TSTQNAKQKMNELFLDVEVEFVQSFYNKKPEEEPFEQFVK 830
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.5 bits (58), Expect = 6.7
Identities = 27/103 (26%), Positives = 43/103 (41%)
Frame = +3
Query: 204 RKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQ 383
+K+KS V+ K KK S+ + V P K K P QT ++ +
Sbjct: 1654 KKEKSPEKVE---EKPTSPTKKESSPTKKTDDEVKSPTKKEKSP---QTVEEKPASPTKK 1707
Query: 384 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVE 512
S E+ PK++ EK E++ K+P K++ K E
Sbjct: 1708 EKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAE 1750
>U21323-8|AAA62552.1| 294|Caenorhabditis elegans Hypothetical
protein C45G9.9 protein.
Length = 294
Score = 27.5 bits (58), Expect = 6.7
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +3
Query: 246 KEAWNNKKTSARNLREMGLVSDPNKTIK--IPNFKQTQIQRAKQMVNQIDSDEEVETVVR 419
K A K+++ + + + P+K +P Q +Q+ Q +D+D V+TVV
Sbjct: 60 KSAKRTKRSAPKKAPKKAPMKAPSKPAAKLVPQQAQASLQKPIQS-GIVDADATVKTVVP 118
Query: 420 LPPKKEVAEKLEKQAKAPRKRKFMLPK 500
PP + K APR P+
Sbjct: 119 RPP-TPIPPTGVKPEPAPRSEPLYQPR 144
>U10402-6|AAV34793.1| 360|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform b protein.
Length = 360
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 309 DPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEK 458
DPN+T+ F+Q+ + + Q+ + S + + RLP KE E+ +K
Sbjct: 105 DPNRTLL---FRQSDVPQIAQISWILGSLQTTSKLARLPQYKEKKERFKK 151
>U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform a protein.
Length = 650
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 309 DPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEK 458
DPN+T+ F+Q+ + + Q+ + S + + RLP KE E+ +K
Sbjct: 395 DPNRTLL---FRQSDVPQIAQISWILGSLQTTSKLARLPQYKEKKERFKK 441
>AL032645-1|CAA21674.1| 123|Caenorhabditis elegans Hypothetical
protein Y67A6A.1 protein.
Length = 123
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/79 (20%), Positives = 37/79 (46%)
Frame = +3
Query: 246 KEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLP 425
K+ + KKTS + +S ++ + +++ + + + + + EE E V
Sbjct: 11 KDGVDKKKTSKTKKKSNLSISKSQTSVDMNEKDKSKEAKEAKELKEKKAKEEAEKKVVAT 70
Query: 426 PKKEVAEKLEKQAKAPRKR 482
PKK+ ++ K+ + P K+
Sbjct: 71 PKKDASKDQAKKEEDPNKQ 89
>AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical
protein C17F3.3 protein.
Length = 253
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/68 (25%), Positives = 37/68 (54%)
Frame = +3
Query: 309 DPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKF 488
+ K ++ + K+ + + K+ + + EEV+ + KKE ++ K+++AP+K
Sbjct: 139 EEKKKDEVKDKKEDEKKDDKKPGEKEEKKEEVKKETKKEEKKEEKKEEPKKSEAPKKEG- 197
Query: 489 MLPKGQVE 512
PKG+V+
Sbjct: 198 -EPKGEVK 204
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.5 bits (58), Expect = 6.7
Identities = 27/103 (26%), Positives = 43/103 (41%)
Frame = +3
Query: 204 RKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQ 383
+K+KS V+ K KK S+ + V P K K P QT ++ +
Sbjct: 1654 KKEKSPEKVE---EKPTSPTKKESSPTKKTDDEVKSPTKKEKSP---QTVEEKPASPTKK 1707
Query: 384 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVE 512
S E+ PK++ EK E++ K+P K++ K E
Sbjct: 1708 EKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAE 1750
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.5 bits (58), Expect = 6.7
Identities = 27/103 (26%), Positives = 43/103 (41%)
Frame = +3
Query: 204 RKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQ 383
+K+KS V+ K KK S+ + V P K K P QT ++ +
Sbjct: 1654 KKEKSPEKVE---EKPTSPTKKESSPTKKTDDEVKSPTKKEKSP---QTVEEKPASPTKK 1707
Query: 384 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVE 512
S E+ PK++ EK E++ K+P K++ K E
Sbjct: 1708 EKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAE 1750
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 6.7
Identities = 27/103 (26%), Positives = 43/103 (41%)
Frame = +3
Query: 204 RKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQ 383
+K+KS V+ K KK S+ + V P K K P QT ++ +
Sbjct: 1654 KKEKSPEKVE---EKPTSPTKKESSPTKKTDDEVKSPTKKEKSP---QTVEEKPASPTKK 1707
Query: 384 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVE 512
S E+ PK++ EK E++ K+P K++ K E
Sbjct: 1708 EKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAE 1750
>AB096634-1|BAC76734.1| 360|Caenorhabditis elegans
tryptophanyl-tRNA synthetase (mitochondrial)protein.
Length = 360
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 309 DPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEK 458
DPN+T+ F+Q+ + + Q+ + S + + RLP KE E+ +K
Sbjct: 105 DPNRTLL---FRQSDVPQIAQISWILGSLQTTSKLARLPQYKEKKERFKK 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,793,539
Number of Sequences: 27780
Number of extensions: 191495
Number of successful extensions: 766
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -