Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12h08
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 181 4e-46
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 94 8e-20
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 30 1.5
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 30 1.5
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL021566-1|CAA16501.1| 328|Caenorhabditis elegans Hypothetical ... 28 7.9
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 181 bits (441), Expect = 4e-46
Identities = 88/192 (45%), Positives = 122/192 (63%), Gaps = 1/192 (0%)
Frame = +1
Query: 157 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 336
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 337 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 516
RY+TK R GRGF+L+E++AAG++ ARTIGIAVD RR NK+ E L+ N R+KEY+A+
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123
Query: 517 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 693
LILFP K KG+++ EE K+A QLRG ++P+ R +T+ E+ + ++ LR
Sbjct: 124 LILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLR 183
Query: 694 GARSIAKLVGIR 729
R+ K G R
Sbjct: 184 KERADKKYRGKR 195
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +1
Query: 157 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 336
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 337 VRYHTKVRAGRGFTLREIRAAGLN 408
RY+TK R GRGF+L+E++AA N
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAEEN 87
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 520 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 675
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 520 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 675
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 520 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 675
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 681 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 550
IS E++ I + SC R L H W T + TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441
>Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical
protein ZK1010.8 protein.
Length = 388
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = -3
Query: 293 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 204
RGAT A+A + I++CF+++ GW QV+ N+
Sbjct: 9 RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 681 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 550
IS E++ I + SC R L H W T + TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441
>AL021566-1|CAA16501.1| 328|Caenorhabditis elegans Hypothetical
protein F08E10.1 protein.
Length = 328
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 27 LKFLAINY*N---NKLLFFRNKVHGVVRTSISIFV 122
+ F+ NY N N L+ F VHG+ T I +FV
Sbjct: 257 ISFIYFNYQNQFHNNLIVFAFAVHGIASTLIMVFV 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,204,418
Number of Sequences: 27780
Number of extensions: 337027
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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