Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h07
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   6.5  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   6.5  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    24   8.6  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    24   8.6  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    24   8.6  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.6  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 2   SIHTNADERKCSNIISVLKQILE*FKFQQHKSQTVVM*K*RYS 130
           SIH   D  +  N++SVL   LE +  Q ++ +T +    +YS
Sbjct: 98  SIHEKKDYIEIINVLSVLTSCLEEYGNQINQQETFIRFFFKYS 140


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 263 HEHAKERTHESSRCSRRTL 319
           HE+ KERT +SS  SR ++
Sbjct: 352 HEYTKERTAQSSPSSRMSM 370


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 252 HRISRTLYVTEYTRTDRLHFQSITYIRHVVRIK 154
           H++++   V++ T T RLH  + T I++++  K
Sbjct: 264 HKLAKNFLVSDATVTKRLHIINPTEIKNLLDSK 296


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 216 CIQLHKEFARFC-GRCSMNTQKNALMNLLDAQD 311
           C+ +H   AR       +N Q+NAL +LLD+ D
Sbjct: 203 CLLIHHAEARAQEANDLLNEQRNALQSLLDSLD 235


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 282 RSFACSWNTGHRISRTLYVTEYTRTDRLHFQSITYI 175
           ++ +CS++T   I   +YV  +    RL F++  Y+
Sbjct: 134 KNTSCSFSTLMSILALVYVPSWINLPRLFFRTFRYV 169


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 25  TQVLKYYFSAEANIRVI*ISTT*KSNGCNVKITL 126
           + +L+ Y+  +AN+    + T+  SN CN + T+
Sbjct: 445 SDILRDYWGKKANLPTALLDTSINSNWCNYEDTV 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,208
Number of Sequences: 5004
Number of extensions: 30843
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)