Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h07
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0372 - 20013078-20013533,20013969-20014062,20014247-20014422     27   4.8  
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682...    27   8.3  

>06_03_0372 - 20013078-20013533,20013969-20014062,20014247-20014422
          Length = 241

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 231 KEFARFCGRCSMNTQKNALMNL 296
           KEF + C RC  +T KN L  L
Sbjct: 78  KEFIQRCARCQKHTSKNFLQEL 99


>05_04_0256 -
           19465636-19466709,19467649-19467765,19468168-19468279,
           19469019-19469167,19469378-19469449,19469544-19469609,
           19471945-19472073,19474539-19474647,19475225-19475304,
           19475408-19475533,19475607-19475657,19475738-19475920,
           19476019-19476105,19476184-19476294,19476692-19476796,
           19477513-19477678,19477769-19477941,19478022-19478094,
           19479472-19479655,19479759-19480203
          Length = 1203

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 353 KLVQQY*IISHIKSVLSI*KIHECVLLRVHGTPATESREL 234
           K+V +Y   SH+K +  +  IHE     + G P T    L
Sbjct: 602 KIVHRYHFASHLKRMSVVVSIHEKYYAFIKGAPETIQERL 641


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,202,932
Number of Sequences: 37544
Number of extensions: 159417
Number of successful extensions: 238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)