Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h07
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56249| Best HMM Match : cNMP_binding (HMM E-Value=5.4e-23)          27   4.9  

>SB_56249| Best HMM Match : cNMP_binding (HMM E-Value=5.4e-23)
          Length = 279

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = -1

Query: 248 ESRELFM*LNTLERTGYIFNPSR--TYA-----T*FESRKGNRNIY-ENNVIFTLQPFDF 93
           ES E FM   +L  T Y+F P     YA       +  R+G  NI  E+NVI TL P  F
Sbjct: 129 ESDENFMRTLSLHTTSYVFKPGDYIVYAGDMGREMYCIRRGQVNILCEDNVIGTLGPGSF 188

Query: 92  Y 90
           +
Sbjct: 189 F 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,908
Number of Sequences: 59808
Number of extensions: 216748
Number of successful extensions: 437
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)