Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h07
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   1.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.4  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 225 TEYTRTDRLHFQSITY 178
           T+Y  +DRL+F+ I++
Sbjct: 426 TDYDMSDRLYFEEISF 441


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 202 ATFSIHHVHTPRSSNQEKAIV 140
           + +S+HHV + R S+ E+  +
Sbjct: 436 SAYSLHHVRSSRESSCEQTYI 456


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 142 RLPFLDSNYVAYVRDG 189
           +LP L SNY+  V++G
Sbjct: 896 KLPTLISNYIEAVKEG 911



 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 418  FNSDNFISKNNCHVHIYISLRLS 350
            F   +FIS  + ++H+Y  L++S
Sbjct: 986  FEHRHFISGIDSNLHVYAPLKIS 1008


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,785
Number of Sequences: 438
Number of extensions: 1942
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)