Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h07
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    26   9.3  
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    26   9.3  

>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 359 TTKLVQQY*IISHIKSVLSI*KIHECVLLRVHGTPATESREL 234
           + +++Q+Y   SH+K +  I +I E  L  V G P T    L
Sbjct: 575 SVQIMQRYHFASHLKRMSVIVRIQEEYLAFVKGAPETIQERL 616


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to X4 protein GI:21386798,
           Y4 protein GI:21386800 from  [Silene dioica]; contains
           Pfam profiles PF00300: phosphoglycerate mutase family,
           PF01535: PPR repeat
          Length = 1053

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 19/88 (21%), Positives = 35/88 (39%)
 Frame = -3

Query: 405 TLFQRIIVMYIYTFPYD*VSTTVLNYFAYKVRLEHLEDS*VRSFACSWNTGHRISRTLYV 226
           +L    + ++ ++ P   + T +L           +EDS V     SW  G +I R    
Sbjct: 334 SLISNCVGVFTHSLPIKCLLTGILGCSPVMTHKICVEDSSVTVLQHSWRNGWQIKRMNDT 393

Query: 225 TEYTRTDRLHFQSITYIRHVVRIKKRQS 142
                  +  F S++ + H  R  +RQ+
Sbjct: 394 AHLRLFKKALFCSVSRLLHTERHTERQN 421


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,973,180
Number of Sequences: 28952
Number of extensions: 143983
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)