Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12h04
(584 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05230.1 68416.m00571 signal peptidase subunit family protein... 94 7e-20
At5g27430.1 68418.m03274 signal peptidase subunit family protein... 89 2e-18
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic... 33 0.19
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic... 33 0.19
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit... 28 4.0
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit... 28 4.0
At5g62620.1 68418.m07859 galactosyltransferase family protein co... 28 5.3
>At3g05230.1 68416.m00571 signal peptidase subunit family protein
contains Pfam profile: PF04573 signal peptidase subunit
Length = 167
Score = 93.9 bits (223), Expect = 7e-20
Identities = 46/116 (39%), Positives = 67/116 (57%)
Frame = +3
Query: 195 QMNTVKVVVKNVPDYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNE 374
Q + ++ + N+ + ND LT D+ DL +LF WN KQ+F+++ AEY TP N
Sbjct: 35 QNPSAEIQILNINRFKKQSHGNDEVSLTLDISADLQSLFTWNTKQVFVFVAAEYETPKNS 94
Query: 375 LNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAG 542
LNQV LWD II E+A + ++ KY F D G L+G + LTL W+++P G
Sbjct: 95 LNQVSLWDAIIPAKEHAKFRIQ-VSNKYRFIDQGQNLRG-KDFNLTLHWHVMPKTG 148
>At5g27430.1 68418.m03274 signal peptidase subunit family protein
contains Pfam profile: PF04573 signal peptidase subunit
Length = 167
Score = 89.4 bits (212), Expect = 2e-18
Identities = 52/155 (33%), Positives = 79/155 (50%)
Frame = +3
Query: 78 MYSVLTRGNAILTYTLSVXXXXXXXXXXXXXXVDYRTGAQMNTVKVVVKNVPDYGASRER 257
M+S R NA+LT+ +++ + AQ+ + N+ +
Sbjct: 1 MHSFGYRANALLTFAVTILAFICAIASFSDNFSNQNPSAQIQ-----ILNINWFQKQPHG 55
Query: 258 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 437
ND LT ++ DL +LF WN KQ+F ++ AEY T N LNQV LWD II E+A +
Sbjct: 56 NDEVSLTLNITADLQSLFTWNTKQVFAFVAAEYETSKNALNQVSLWDAIIPEKEHAKF-W 114
Query: 438 KNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAG 542
++ KY F D G+ L+G + LTL W+++P G
Sbjct: 115 IQISNKYRFIDQGHNLRG-KDFNLTLHWHVMPKTG 148
>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 545
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 231 PDYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYI 359
P+Y A RE + GF ++K + L++WN Q YL A+ I
Sbjct: 491 PEYSAYRE-SSFGFGILEVKNETHALWSWNRNQDLYYLAADVI 532
>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 516
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 231 PDYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYI 359
P+Y A RE + GF ++K + L++WN Q YL A+ I
Sbjct: 462 PEYSAYRE-SSFGFGILEVKNETHALWSWNRNQDLYYLAADVI 503
>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1329
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 234 DYGASRERNDLGFLTFDLKTDLSN---LFNWNVKQLFLYLTAEYI 359
D+ S+E + + + K L N LF WNVK+ + L +EY+
Sbjct: 168 DFNESKEYAPILAIVINRKGSLMNELALFRWNVKEESICLISEYV 212
>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1379
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 234 DYGASRERNDLGFLTFDLKTDLSN---LFNWNVKQLFLYLTAEYI 359
D+ S+E + + + K L N LF WNVK+ + L +EY+
Sbjct: 226 DFNESKEYAPILAIVINRKGSLMNELALFRWNVKEESICLISEYV 270
>At5g62620.1 68418.m07859 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 681
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 339 YLTAEYITPSNELNQVVLWDKIILRGE 419
YLTA Y +P + LWDK++L G+
Sbjct: 651 YLTAHYQSPRQ---MICLWDKLVLTGK 674
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,523,581
Number of Sequences: 28952
Number of extensions: 216038
Number of successful extensions: 428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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