Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h03
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   2.0  
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    26   3.5  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    26   3.5  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   8.2  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    25   8.2  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 135 FGGRRKYIMVPFKPDV 182
           +GG+RKYI   F PD+
Sbjct: 945 YGGKRKYIFSSFNPDI 960


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 196 LVPSITSGLNGTIIYLRRPPK*YLHQFLSASMVQSQLNPHLNISNNK 56
           LVPS T GLN    + + P   ++ +F + S ++       N+ + K
Sbjct: 15  LVPSSTIGLNSKTYHYKFPLLSFVREFSNGSYLRESAQNPANLGSQK 61


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 382 EIASLSGSYALLSNRSSVKGCPLRTTKHFFSSLVIKLYL 266
           E++  S S  +      +KG  L +T HF S L+I L+L
Sbjct: 171 EVSLKSSSDEVKKRLQRLKGNELHSTAHFVSLLLIVLFL 209


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +3

Query: 423 SDGTSAAVPLLERGSETVG-LWSAVYDSQVDSHLM---VSVTAAADCMVAAWKV 572
           SD T   +P  ++ +E +  LW+ VYD+Q     M   +S T+ A+  +AA KV
Sbjct: 315 SDCTRTVLPHGQKMTERMEKLWNLVYDAQTAGIQMLSHLSNTSCAEVDLAARKV 368


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +3

Query: 399 SDIEKRGPSDGTSAAVPLLERGSETVGLWSAVYDSQVDSHLMVSVTAAADCMVAAWK 569
           SD+E    S G +AA+  +E   +T+G+      + V+ + +  + A    +   W+
Sbjct: 19  SDLEAAVYSSGVAAALRSMELKGKTIGVMITASHNPVEDNGVKIIDADGGMLAMEWE 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,863
Number of Sequences: 5004
Number of extensions: 56056
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)