Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12h03
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 32 0.30
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 30 1.2
11_08_0060 + 28108548-28109402 30 1.6
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 30 1.6
10_06_0136 - 11114409-11114576,11114656-11114784,11114873-111150... 29 2.7
09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468... 29 3.6
11_08_0061 + 28117007-28117846 28 4.8
04_01_0014 - 231228-233179,233522-233714 28 6.3
11_08_0059 + 28104958-28105827 27 8.4
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319... 27 8.4
05_01_0550 + 4820086-4821255,4822112-4822321,4822429-4822524,482... 27 8.4
>03_06_0252 -
32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 352 GHMIQIKTLFHSSSMCLIL----RSVALQMGRPQLCLCWKEALKQLDCGVRSMTVKWTLI 519
G++I + L SS + +L +V +Q+ ++C+ +E LKQ C R++ V ++
Sbjct: 360 GNIIMAQRLSFSSDIATVLLAAGSTVTIQVAAKRMCITLEEFLKQPPCDSRTLLVSISIP 419
Query: 520 SW 525
W
Sbjct: 420 DW 421
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 352 GHMIQIKTLFHSSSMCLIL----RSVALQMGRPQLCLCWKEALKQLDCGVRSMTVKWTLI 519
G++I + L S + +L +V +Q+ ++C+ +E LKQ C R++ V ++
Sbjct: 359 GNIIMAQRLSFPSDIATVLLAAGSTVTIQVAAKRMCITLEEFLKQPPCDSRTLLVSISIP 418
Query: 520 SW 525
W
Sbjct: 419 DW 420
>11_08_0060 + 28108548-28109402
Length = 284
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 117 NWWRYYFGGRRKYIMVPFKPDVIDGTRQGVLSVQNIDFCTDINGEHHH 260
N W Y GGRR + PF V+DG IDF D G H+
Sbjct: 124 NLWNAYLGGRRAGVPRPFGDAVVDG----------IDFFIDQGGADHY 161
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 424 QMGRPQLCLCWKEALKQLDCGVRSMTVKWTLISWC 528
Q+ ++CL +E LKQ C R++ + ++ WC
Sbjct: 383 QVASKRMCLTLEEFLKQPPCDSRTLLISISIPDWC 417
>10_06_0136 -
11114409-11114576,11114656-11114784,11114873-11115016,
11115130-11115299,11116441-11116528,11116590-11116652,
11116678-11116799,11118506-11118671
Length = 349
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -1
Query: 558 QPCSQRPPSPTP*DESPLDCH--RPHST 481
+PC PP P P SP H RPHST
Sbjct: 14 RPCKLAPPPPPPLPVSPSPRHHRRPHST 41
>09_06_0347 +
22445962-22446154,22446495-22446616,22446764-22446885,
22447405-22447594,22447874-22448014,22448257-22448724,
22448842-22449609,22450185-22450373
Length = 730
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2
Query: 410 LNIRHIDDE*NSVFIWIICPIEQQIKREGLSSTDN*TF 297
L+ + + ++ +V + ICPI+Q + R+ L + D T+
Sbjct: 646 LSFKSVSEDFGNVPSYFICPIQQDVMRDPLIAADGFTY 683
>11_08_0061 + 28117007-28117846
Length = 279
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +3
Query: 117 NWWRYYFGGRRKYIMVPFKPDVIDGTRQGVLSVQNIDFCTDINGEHHH 260
N W Y GGRR + PF +DG IDF D G H+
Sbjct: 118 NLWNAYLGGRRAGVPRPFGDAAVDG----------IDFFIDQGGADHY 155
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 181 TSGLNGTIIYLRRPPK*YLHQFLSASMV 98
T+G G I+ LR PPK Y + S +++
Sbjct: 105 TNGTKGVILMLRNPPKVYWYGLTSPTLI 132
>11_08_0059 + 28104958-28105827
Length = 289
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 117 NWWRYYFGGRRKYIMVPFKPDVIDG 191
N W + GRRK ++ PF +DG
Sbjct: 120 NLWNAFLAGRRKGVLRPFGNAAVDG 144
>08_02_0800 +
21330446-21330722,21331040-21331182,21331925-21331978,
21332065-21332130,21333075-21333096,21333347-21333460,
21334153-21334278,21334891-21334925,21335709-21335809,
21335911-21335971,21336482-21336572,21337657-21337842,
21338755-21338922,21339006-21339208,21339313-21339431,
21339910-21339928,21340092-21340130,21340238-21340465,
21340987-21341088,21341842-21341889,21343622-21343765,
21343873-21343968,21344224-21344325,21345188-21345274
Length = 876
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 289 SLVIKLYLLVW*CSPLMSVQKSMFCTDKTPCLVPS 185
S + + LL+ CSP SV+KS T+ TP + S
Sbjct: 612 SFLTMILLLI--CSPAASVEKSELVTNSTPVTIDS 644
>05_01_0550 +
4820086-4821255,4822112-4822321,4822429-4822524,
4822610-4822828,4823201-4823395,4823466-4823612,
4823712-4823861,4825015-4825145,4825234-4825477
Length = 853
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 582 CQCQLSKRQPCS--QRPPSPTP*DESPLDCHRPHSTIQLFQSLFPTEAQLRTS 430
C+ +SK +P Q PP PTP ESP P + Q QS EA+ TS
Sbjct: 775 CRPIMSKPKPAPKPQTPPPPTPPTESP-TTPEPQTPEQQQQSNGAGEAEEPTS 826
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,645,568
Number of Sequences: 37544
Number of extensions: 387121
Number of successful extensions: 1051
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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