Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h03
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41551| Best HMM Match : Transglut_N (HMM E-Value=3.1e-25)           53   2e-07
SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)           45   4e-05
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       31   0.53 
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            31   0.70 
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 31   0.92 
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_23998| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_30560| Best HMM Match : Herpes_UL73 (HMM E-Value=4.5)               28   6.5  
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_41551| Best HMM Match : Transglut_N (HMM E-Value=3.1e-25)
          Length = 202

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 13/140 (9%)
 Frame = +3

Query: 207 LSVQNIDFCTDINGEHHHTSRYNL------MTRDEKK-----CLVVRRGQPFTLDLLLNR 353
           L  + +D+  +IN ++H+T++Y        +T +E K      L+VRRGQ F L +L +R
Sbjct: 4   LQPKEVDYHLEINHKNHNTTKYPKHPRNPELTENENKNDIGGLLIVRRGQTFDLTILFDR 63

Query: 354 AYDPDKDAISFIIYVSDIEKRGPSDGTSAAVPLLERGSETVGLWS-AVYDSQVD-SHLMV 527
           AYDP+ D I+      D+      D +   +  L   +ET   WS  +  ++VD   + +
Sbjct: 64  AYDPENDQITL-----DLATGTRPDQSKGTLLRLRDSTETAP-WSWGMQITRVDGDRVSM 117

Query: 528 SVTAAADCMVAAWKVDIDTK 587
            VT+ AD  +  +++ ++T+
Sbjct: 118 QVTSPADAAIGRYELLVETE 137


>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
          Length = 686

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 36/143 (25%), Positives = 66/143 (46%)
 Frame = +3

Query: 159 MVPFKPDVIDGTRQGVLSVQNIDFCTDINGEHHHTSRYNLMTRDEKKCLVVRRGQPFTLD 338
           ++P KP +        L    +D+  + N + H+T+        E++ L+VRRGQ F L 
Sbjct: 6   VLPPKPILDTRLHNSQLKPVEVDYHEEANRKAHNTAF-------EQEGLIVRRGQEFELT 58

Query: 339 LLLNRAYDPDKDAISFIIYVSDIEKRGPSDGTSAAVPLLERGSETVGLWSAVYDSQVDSH 518
           +  +R Y+ D D ++  +     E+   S GT   V + E  + T G WS    S     
Sbjct: 59  IKFDRNYNADTDQLTLQLVTG--ERPQQSKGT--IVRIKEHTATTRGSWSMEVTSVKGDS 114

Query: 519 LMVSVTAAADCMVAAWKVDIDTK 587
           + V V + A   +  +++ ++T+
Sbjct: 115 VSVKVLSPATAPIGKYQLYVETE 137


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 76   NADLIEI-EPWKHLRTGGDITLGDAVNILW 162
            N D I I  P ++L  GGD+ +GDA  + W
Sbjct: 1024 NHDFISILSPCRYLNIGGDVPIGDAFKLYW 1053


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 527 HHEMRVHLTVIDRTPQSNCFRASFQQRHSCGR 432
           HH + + +    R+   NC RASF   H+C R
Sbjct: 380 HHSLSITIVYAHRSVNYNCLRASFFVNHNCLR 411


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
 Frame = -1

Query: 567 SKRQPCSQRPPSPTP*DESPLDC--HRPHSTIQLFQS--LFPTEAQLRTSHLKGHASQYQ 400
           S + P +  P +PTP + +P++C  ++P+S    F S  L  T+ QL ++ L   ++Q Q
Sbjct: 296 STQFPSTPAPINPTPINPTPINCSSYQPNSHQPQFPSTQLLSTQLQLLSTQLL--STQLQ 353

Query: 399 THR 391
            HR
Sbjct: 354 QHR 356


>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1249

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
 Frame = -2

Query: 149 TASPKVISPPV--------LKCFHGSISIKSAFKYIE*QNHYFAHR--XIPEYCSCRXN 3
           TAS  V SPP         L      + IKS F+Y E  +H+F  R   I + CSC  N
Sbjct: 527 TASEPVYSPPTSLAEFISRLVMMDSEVKIKSLFRYEE--SHHFGLRPDYIIDMCSCERN 583


>SB_23998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 246 GEHHHTSRYNLMTRDEKKCLVVRRGQPFTLDLLLNRAYDPDKDAISFIIYVSDIEKRGPS 425
           G H  T+R + +T+D+   L       F LD+     +  D+D   F+  ++ +  R PS
Sbjct: 88  GGHFFTTRLSTLTKDQDSMLASMFSGRFNLDVDSEGRFFIDRDGTYFVFLLNYL--RDPS 145

Query: 426 DGTSAAVPL 452
               A+V +
Sbjct: 146 QLPPASVAM 154


>SB_30560| Best HMM Match : Herpes_UL73 (HMM E-Value=4.5)
          Length = 87

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 549 SQRPPSPTP*DESPLDCHRPH 487
           S  PPSP     S +DCHR H
Sbjct: 49  SPSPPSPPTPSSSSIDCHRLH 69


>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 182 HIWLKWHHNIFTASPKVISPPVLKCFHGS-ISIKSAFKYIE*QNHYFAHRXIP 27
           H  +  +   F   P  +  PV    +GS I++   ++Y+   N+ F H  +P
Sbjct: 40  HSTINLNREFFVRIPLKVMVPVTPALNGSQIAVNDYYRYLTQINYSFIHDLVP 92


>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 493  TALHNPTVSEPLSNRGTAADVPSEGPRFSISDT*MMN 383
            T+LHNP V + L+NR    D P   P+ ++     MN
Sbjct: 983  TSLHNPNVKDKLNNR-QVTDSPLFSPQPTVEKFIQMN 1018


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,139,332
Number of Sequences: 59808
Number of extensions: 446979
Number of successful extensions: 1064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)