Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h03
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z74038-5|CAA98494.1|  137|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    27   9.9  

>AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical
           protein Y40C5A.1 protein.
          Length = 242

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 533 HRHHEMRVHLTVIDRTPQSNCFRASFQQRHSC 438
           H HH   +   V   TP  NCFR     R+ C
Sbjct: 149 HHHHHDSIRNFVHHDTPCRNCFRIIVGSRYHC 180


>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 210 SVQNIDFCTDINGEHHHTSRYNLMTRDEKKCLVV 311
           S++    CT+++G + + S   L+ RDEK C ++
Sbjct: 589 SIKVFGSCTEMHGYYRNHSILILLQRDEKVCKIL 622


>Z74038-5|CAA98494.1|  137|Caenorhabditis elegans Hypothetical
           protein F58B4.4 protein.
          Length = 137

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = +3

Query: 330 TLDLLLNRAYDPDKDAISFIIY---VSDIEK----RGPSDGTSAAVPLLERGSETVGLWS 488
           T++L+ NR++DP+K+A +  I    V D  K    R PSD    ++  ++ G +   L+ 
Sbjct: 41  TVELVSNRSFDPEKNASNLKIVKDAVDDYSKKENIRYPSDNIKQSI--IDHGGKFAVLFE 98

Query: 489 AVYDSQVD 512
              D++ D
Sbjct: 99  IRDDARCD 106


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 120 WWRYYFGGRRKYIMVPFKPDVIDGTRQGVLSVQNI 224
           WW Y++GG R+  +   K +V    RQ +     I
Sbjct: 412 WWTYWYGGGRELWIPKKKKEVPKKRRQSLADASKI 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,747,748
Number of Sequences: 27780
Number of extensions: 325208
Number of successful extensions: 871
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)