Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h03
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.73 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 450 LLERGSETVGLWSAVYDSQVDSHLMVSVTAAA 545
           LL+RG ET   W  +  + +  ++   + AAA
Sbjct: 741 LLQRGQETGAEWPGLEHANIGPYIQKMIAAAA 772


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 290 IPGHQIVSAGVVMFSIDVGAE 228
           IP HQ+   G++ FS+ VGAE
Sbjct: 3   IPSHQVWLVGLLAFSL-VGAE 22


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 290 IPGHQIVSAGVVMFSIDVGAE 228
           IP HQ+   G++ FS+ VGAE
Sbjct: 3   IPSHQVWLVGLLAFSL-VGAE 22


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 217 CTDKTPCLVPSITSGLNGTIIYLRRP 140
           CT    C+VPS    L   + +L+ P
Sbjct: 146 CTAVLRCVVPSFVKDLVRVVSWLQEP 171


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 217 CTDKTPCLVPSITSGLNGTIIYLRRP 140
           CT    C+VPS    L   + +L+ P
Sbjct: 146 CTAVLRCVVPSFVKDLVRVVSWLQEP 171


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 276 NCICWCGDVL 247
           +C CWC D L
Sbjct: 10  SCCCWCCDNL 19


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 253 CSPLMSVQKSMFCTDKTP 200
           CSP +SV  S  C  +TP
Sbjct: 36  CSPDLSVFTSPACGSETP 53


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 570 LSKRQPCSQRPPSPTP*DESPLDCH 496
           + +R P S R PSP+     P   H
Sbjct: 33  VDRRSPSSSRSPSPSLLTSQPHQDH 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,899
Number of Sequences: 438
Number of extensions: 4158
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)