Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h03
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    30   1.00 
At5g24260.1 68418.m02854 prolyl oligopeptidase family protein si...    28   4.0  
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea...    28   4.0  
At1g70080.1 68414.m08063 terpene synthase/cyclase family protein...    28   4.0  
At1g16350.1 68414.m01956 inosine-5'-monophosphate dehydrogenase,...    28   4.0  
At4g26770.1 68417.m03856 phosphatidate cytidylyltransferase, put...    27   9.3  
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT...    27   9.3  
At3g52210.1 68416.m05735 mRNA capping enzyme family protein cont...    27   9.3  
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    27   9.3  

>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 15/29 (51%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +3

Query: 390 IYVSDIEKRGPS-DGTSAAVPLLERGSET 473
           I+   I+KRG S +GTS AVP++ER +E+
Sbjct: 380 IHERKIKKRGDSGEGTSRAVPVVERATES 408


>At5g24260.1 68418.m02854 prolyl oligopeptidase family protein
           similar to dipeptidyl peptidase IV [Stenotrophomonas
           maltophilia] GI:1753197; contains Pfam profiles PF00326:
           prolyl oligopeptidase family, PF00930: Dipeptidyl
           peptidase IV (DPP IV) N-terminal region
          Length = 746

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 319 DSPSRLICCSIGHMIQIKTLFHSSSMCLILRSVALQ 426
           DSP R+  CS+     +K L+  +S   IL+S+ L+
Sbjct: 455 DSPPRVSLCSLSDGTVLKILYEQTSPIQILKSLKLE 490


>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
          Length = 305

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 433 RPQLCLCWKEALKQLDCGVRSMTVKW--TLISWCR*RRPLTAW-LPLGKLTLTQ 585
           R   C C  E + ++D  VRS+TV W  T++     R     W L  GK T+T+
Sbjct: 149 RANSCSC--ELVPEVDTAVRSLTVMWDGTMVVAANNRGTCYVWRLLRGKQTMTE 200


>At1g70080.1 68414.m08063 terpene synthase/cyclase family protein
           similar to (+)-delta-cadinene synthase [Gossypium
           hirsutum][GI:8389329], sesquiterpene synthases
           [GI:11934937][Lycopersicon hirsutum],
           [GI:11934933][Lycopersicon esculentum]; contains Pfam
           profile: PF01397: Terpene synthase family
          Length = 611

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = -3

Query: 298 FFSSLVIKLYLLVW*CSPLM--SVQKSMFCTDKTPCLVPSITSGLNG---TIIYLRRPPK 134
           F S L  +L L      PL+  S+  S F + K  CLV + T+  +    T  +   PP 
Sbjct: 15  FLSRLCWRLNLSSSYHYPLLKSSLSFSRFQSPKKLCLVRATTNPTDDNSTTRSFTPHPPS 74

Query: 133 *YLHQFLSASMVQSQLN 83
            + H FLSAS+ Q++++
Sbjct: 75  LWGHHFLSASVNQTEMD 91


>At1g16350.1 68414.m01956 inosine-5'-monophosphate dehydrogenase,
           putative strong similarity to SP|P47996 gb|L34684
           inosine monophosphate dehydrogenase (IMPDH) from
           Arabidopsis thaliana; member of the PF|00478 IMP
           dehydrogenase family
          Length = 502

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/87 (20%), Positives = 40/87 (45%)
 Frame = +3

Query: 327 FTLDLLLNRAYDPDKDAISFIIYVSDIEKRGPSDGTSAAVPLLERGSETVGLWSAVYDSQ 506
           F+ + L ++ Y    D + F+ +  D      +D  S +  L +R   ++   ++  D+ 
Sbjct: 8   FSAEKLFSQGYSYTYDDVIFLPHFIDFS----TDAVSLSTRLSKRVPLSIPCVASPMDTV 63

Query: 507 VDSHLMVSVTAAADCMVAAWKVDIDTK 587
            +SH+  ++ A     +  +  DIDT+
Sbjct: 64  SESHMAAAMAALGGIGIVHYNCDIDTQ 90


>At4g26770.1 68417.m03856 phosphatidate cytidylyltransferase,
           putative / CDP-diglyceride synthetase, putative similar
           to CDP-diacylglycerol synthetase GI:2182104 from
           [Solanum tuberosum]
          Length = 471

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 299 FFLIPGHQIVSAGVVMFSIDVGAEINVLHR*DTLSRSVDHIWLKWHHNIFTA 144
           F +  GH  + A VV+  I +  E+  L R     R +   WL   H  FTA
Sbjct: 112 FIIYMGHLYIWAMVVVIQIFMAKELFFLRRRAHEERRLPGFWLLNWHFFFTA 163


>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
           identical to homeobox protein knotted-1 like 1  (KNAT1)
           SP:P46639 from [Arabidopsis thaliana]
          Length = 398

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -2

Query: 566 PSGNHAVSGRRHRHHEMRVHLTVIDRTPQSNCFRASFQQRHSCGRP 429
           P  N+  +   H  H +  H++ +      NCFR+   Q ++   P
Sbjct: 48  PGYNNTNNNNHHHQHMLFPHMSSLLPQTTENCFRSDHDQPNNNNNP 93


>At3g52210.1 68416.m05735 mRNA capping enzyme family protein
           contains Pfam profile PF03291: mRNA capping enzyme,
           large subunit
          Length = 354

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 306 LNIFSHPWSSNCICWCG 256
           +NIF+HP+++ C  +CG
Sbjct: 25  INIFAHPYATVCELYCG 41


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
            PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 111  LKNWWRYYFGGRRKYIMVPFKPDVIDGTRQGVLSVQNIDFCTDINGEHHH 260
            + NW   +  G +  ++ PF P V+       + V N +  T +NG  +H
Sbjct: 1019 IANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGFDNH 1068


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,540
Number of Sequences: 28952
Number of extensions: 300903
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)