Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h01
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1326 - 26158279-26159712                                         34   0.058
07_03_0476 - 18547223-18548187,18548743-18549958                       29   2.9  
01_01_0887 + 6978869-6979053,6979183-6979558,6979651-6979734,697...    28   3.8  
02_05_0875 + 32393496-32393881,32395297-32395397,32395493-323956...    27   6.6  
04_01_0595 + 7840842-7841345,7841518-7841748,7841919-7842017           27   8.8  

>08_02_1326 - 26158279-26159712
          Length = 477

 Score = 34.3 bits (75), Expect = 0.058
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = -1

Query: 307 TLITFLTLAFCFSVHFPQLVAMVSGKAFLKSEASGVHRPLSRKQFI*AFNNLSLVTIGST 128
           T++  L L   F+VH+P L++     +   + A+G HR  SR        + + V  G  
Sbjct: 46  TILATLCLVCLFTVHYPSLLSHSFHLSSAAAAANGKHRAASRSSHRSLLGSSAAVAYGGA 105

Query: 127 SKFSYFERSAARQAANRQD 71
           +    +E+   R AA R+D
Sbjct: 106 A----WEKEVRRSAAPRRD 120


>07_03_0476 - 18547223-18548187,18548743-18549958
          Length = 726

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 312 QQKHSTEWEKLVKKHD 359
           ++KH   WEKL++KHD
Sbjct: 400 RRKHGKAWEKLIEKHD 415


>01_01_0887 +
           6978869-6979053,6979183-6979558,6979651-6979734,
           6979838-6979903,6980938-6981007,6981333-6981718,
           6982114-6982154,6982661-6982757
          Length = 434

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 246 ATNCGKCTEKQKANVRKVIKVIQQKHSTEWEKLVKKH--DPSGKHRADFDK 392
           A N G   E++ A +R   K+ + K +  W K  +KH  +   K  AD+D+
Sbjct: 144 AVNQGGPWEERYAMIRLAQKLQKSKRNKRWRKRKRKHVAELFQKEHADYDR 194


>02_05_0875 +
           32393496-32393881,32395297-32395397,32395493-32395674,
           32396135-32396233,32396311-32396403
          Length = 286

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +3

Query: 300 IKVIQQKHSTEWEKLVKKHDPSGK 371
           +KVI++ + + WEKLVK++ P+G+
Sbjct: 260 LKVIEETNES-WEKLVKRNIPAGE 282


>04_01_0595 + 7840842-7841345,7841518-7841748,7841919-7842017
          Length = 277

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = +3

Query: 264 CTEKQKANVRKVIKVIQQKHST-----EWEKLVKKHDPSGK 371
           C+E  +A++ K++KVI +K  T     +   L++KHD  GK
Sbjct: 211 CSEFLQAHLHKLLKVIHKKGFTDEGLKDHALLLEKHDNDGK 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,282,992
Number of Sequences: 37544
Number of extensions: 200763
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)