Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12h01
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11610.1 68414.m01333 cytochrome P450, putative very strong s...    30   0.79 
At1g09410.1 68414.m01052 pentatricopeptide (PPR) repeat-containi...    29   2.4  
At5g01450.1 68418.m00058 expressed protein                             28   3.2  
At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containi...    28   3.2  
At4g02450.1 68417.m00332 glycine-rich protein similar to several...    27   5.5  
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea...    27   5.5  
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea...    27   5.5  
At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein ...    27   7.3  

>At1g11610.1 68414.m01333 cytochrome P450, putative very strong
           similarity to cytochrome P450 (SP:Q9SAB6) [Arabidopsis
           thaliana]; is a member of the PF|00067 Cytochrome P450
           family
          Length = 497

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +3

Query: 294 KVIKVIQQKHSTEWEKLVKKHDPSGKHRADFDKFLL 401
           K+++V  + +S   EK+V++H  +G+H+ADF   LL
Sbjct: 237 KIVEV-SRAYSDLMEKVVQEHLEAGEHKADFVNILL 271


>At1g09410.1 68414.m01052 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 705

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
 Frame = +3

Query: 123 FDVEPIVTSDRLLKAYINCFLDKGRCTPEASDFKKALP--DTIATNC---GKCTEKQKAN 287
           FDV P  T        +  ++  GR   +A +  + +P    IA N    G   + + A 
Sbjct: 226 FDVMPEKTEVSWTSMLMG-YVQNGRIE-DAEELFEVMPVKPVIACNAMISGLGQKGEIAK 283

Query: 288 VRKVIKVIQQKHSTEWEKLVKKHDPSGKHRADFDKFLL 401
            R+V   +++++   W+ ++K H+ +G      D F+L
Sbjct: 284 ARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFIL 321


>At5g01450.1 68418.m00058 expressed protein
          Length = 444

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -1

Query: 355 CFFTSFSHSVECFCCITLITFLTLAFC 275
           CFF S  H V CF C T I   T  FC
Sbjct: 403 CFFLSCGHCVACFQCGTRIA-ETSGFC 428


>At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 738

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = +3

Query: 129 VEPIVTSDRLLKAY-INCFLDKGRCTPEASDFKKALPDTIATNCGKCTEKQKANVRKVIK 305
           ++ +V + R+ +AY + C + +G   P    ++     TI +  G C EK+   VRK+++
Sbjct: 626 IKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYR-----TIIS--GLCKEKETEKVRKILR 678

Query: 306 -VIQQKHSTEWEKLVKKHDPSGKHRADFDKF 395
             IQ+    +     + +    ++R DF +F
Sbjct: 679 ECIQEGVELDPNTKFQVYSLLSRYRGDFSEF 709


>At4g02450.1 68417.m00332 glycine-rich protein similar to several
           proteins containing a tandem repeat region such as
           Plasmodium falciparum GGM tandem repeat protein
           (GB:U27807)
          Length = 241

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 270 EKQKANV--RKVIKVIQQKHSTEWEKLVKKHDPSGKHRADFDKFL 398
           E+ K N+  R +  +I++     W KL++   P    + D+DK++
Sbjct: 64  EESKINIGERSIFCIIEKAEPERWNKLLRVKKPPHYVKVDWDKWV 108


>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 357 DPSGKHRADFDKFLLGS*IFINKLFWFRP 443
           DPS K +   +K LLG   F+  L W  P
Sbjct: 49  DPSDKRKYTSEKILLGHTSFVGPLAWIPP 77


>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 357 DPSGKHRADFDKFLLGS*IFINKLFWFRP 443
           DPS K +   +K LLG   F+  L W  P
Sbjct: 49  DPSDKRKYTSEKILLGHTSFVGPLAWIPP 77


>At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 364

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 255 CGKCTEKQKANVRKVIKVIQQKHSTEWEKLVKKHDPSGKHR 377
           CG C  +   N  K+I   +Q H TE +K +++ + S  HR
Sbjct: 119 CGVCDRRFYTN-EKLINHFKQIHETENQKRMRQIESSKGHR 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,477,946
Number of Sequences: 28952
Number of extensions: 174072
Number of successful extensions: 452
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)