Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g19
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    30   0.19 
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   5.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.2  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    24   9.5  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    24   9.5  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 307 DSLTEQKLNFITEVDSAHTKVKELNXKVNQYNEEIKQYK 423
           DS++      I++V SAH++V++ N +V+  N E+   K
Sbjct: 44  DSISRLNSLSISDVPSAHSRVEQWNQQVHNLNHELSSNK 82


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 373  ELNXKVNQYNEEIKQYKADLIVKDN 447
            E N K+N  +EEI++ K D+I   N
Sbjct: 944  EANEKLNARDEEIERLKVDIIGLQN 968


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 325  FVLSKNQQALEEFLNFLCYFFHYFPISQ 242
            F +  ++Q +EE LN+   F HY  I Q
Sbjct: 1073 FTMLCHKQPIEEILNYASNFGHYKAIVQ 1100


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 REDLIHKCKGLLVIAQKAK 192
           REDLIH+CK  L   + A+
Sbjct: 514 REDLIHQCKKFLHTLKTAR 532


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 67  MEAIQNHPSQDGPPKKSPFDELSREDLIHKCK 162
           +E I  HPSQ   P++     L  +DL++  K
Sbjct: 212 VEDISRHPSQTRAPEEFVHMRLDSKDLVNMLK 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,212,831
Number of Sequences: 5004
Number of extensions: 16372
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)