Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12g19
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0926 + 9178804-9180324,9180612-9181157 33 0.14
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 31 0.57
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 28 3.1
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 28 3.1
04_04_0499 + 25674024-25674233,25674515-25675072,25675320-256754... 27 7.1
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 27 9.3
08_02_0556 + 18592393-18592580,18592839-18593031,18593110-185934... 27 9.3
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 27 9.3
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 9.3
>12_01_0926 + 9178804-9180324,9180612-9181157
Length = 688
Score = 32.7 bits (71), Expect = 0.14
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1
Query: 304 VDSLTEQKLNFITEVDSAHTKVKELNXKVNQYNEEIKQYKADL 432
+++LTE + + +V + KVKE N KV + +E++K+ D+
Sbjct: 494 LNNLTEAMKDVLPKVKEENEKVKEENEKVKEQDEKVKEQTVDM 536
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 30.7 bits (66), Expect = 0.57
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +1
Query: 340 TEVDSAHTKVKELNXKVNQYNEEIKQYKADL 432
++ + AHT+ ++L ++N NE+ K+ +ADL
Sbjct: 594 SDAEVAHTRTQDLENELNTANEKFKEVEADL 624
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 307 DSLTEQKLNFITEVDSAHTKVKELNXKVNQYNEEIKQYKADLIVK 441
+SL EQ + TEV+ H VKEL +V + ++ A+L +K
Sbjct: 658 ESLEEQLYSANTEVERLHVIVKELEDEVEKEKMRQEELVAELEMK 702
>07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 215 ACNSDLACLAF*AITSKPLHLWIKSSLLNSSKGLFFGG 102
A SD AF +++ +HL KSSLL S G+++GG
Sbjct: 1237 AVTSDPVMAAFPSVSD--VHLKQKSSLLYSGTGVYYGG 1272
>04_04_0499 +
25674024-25674233,25674515-25675072,25675320-25675415,
25675509-25675601,25675882-25676125,25676239-25676276,
25676377-25676478
Length = 446
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 73 AIQNHPSQDGPPKKSPFDELSREDLIHKCKGLLVIAQKAKQAKS 204
A+ P PP +P L E+ + K ++V+ QKA +AKS
Sbjct: 189 AVAAVPPPPPPPAAAPRPPLVVEEEVEVRKEVVVVEQKAAKAKS 232
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 340 TEVDSAHTKVKELNXKVNQYNEEIKQYKADLIVKDN 447
T + + +VK L KVN NE++ ++D+ KD+
Sbjct: 46 TNLTESEEQVKILCDKVNVLNEKLSAAQSDITTKDS 81
>08_02_0556 +
18592393-18592580,18592839-18593031,18593110-18593499,
18593576-18593686,18593789-18593867,18594048-18594109,
18594182-18594238,18594498-18594581
Length = 387
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 48 LENQFHDGSDSEPSESRWTTKKES 119
+E+ F D + EPS+S T+ KES
Sbjct: 13 VEDHFEDSTQDEPSDSLVTSTKES 36
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 319 LSKNQQALEEFLNFLCYFFHYFPISQL 239
+ K Q+ + + +LC+F +FPIS L
Sbjct: 95 VKKYQRQVNNYGFYLCFFSFFFPISDL 121
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 319 EQKLNFITEVDSAHTKVKELNXKVNQYNEEIKQYKADLIVKDNK 450
E+K NF+ E S KV K+N EE + ++I+K+ K
Sbjct: 4521 EEKTNFVPEKSSVPEKVFTEFEKLNDEVEEHVENDKNIILKNKK 4564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,050,001
Number of Sequences: 37544
Number of extensions: 88650
Number of successful extensions: 283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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