Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g19
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           27   5.5  
SB_802| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.6  

>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 304 VDSLTEQKLNFITEVDSAHTKVKELNXKVNQYNEEIKQYKA 426
           V+ L  +  +F T+V   +TKV +LN K++  N ++    A
Sbjct: 332 VNDLNTKVHDFNTKVHDLNTKVHDLNTKLHDLNTKVHDLNA 372


>SB_802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 60  FHDGSDSEPSESRWTTKKESF 122
           F D SDSE ++S  TT +ESF
Sbjct: 32  FEDYSDSESTQSDHTTNEESF 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,485,857
Number of Sequences: 59808
Number of extensions: 104080
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)