Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12g19
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    32   0.22 
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    27   4.8  
AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 19/103 (18%), Positives = 39/103 (37%)
 Frame = +1

Query: 142  DLIHKCKGLLVIAQKAKQAKSELQAELETXXXXXXXXXXXXXXXXXXXXXXXXXVDSLTE 321
            D I   +  L +AQ++      LQ +L T                            +TE
Sbjct: 777  DKILDLQSQLELAQQSSDLADRLQEDLRTSDARVQELNIQVSELEQQIEVSSREFSVITE 836

Query: 322  QKLNFITEVDSAHTKVKELNXKVNQYNEEIKQYKADLIVKDNK 450
                   ++DS+  ++ E+   +  + EE++  +AD +  ++K
Sbjct: 837  ANKEMQLKLDSSEAQISEMTASLTAFQEEMQSTRADAVASEDK 879


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
           protein Y51A2D.15 protein.
          Length = 1222

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 304 VDSLTEQKLNFITEVDSAHTKVKELNXKVNQYNEEIKQYKADL 432
           V  LT + ++   +V     K++ELN +++  N+EI   KA +
Sbjct: 774 VRELTRENMHTKEQVFMLQEKLRELNLELSTKNDEIDMVKASI 816


>AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical
           protein M03F8.1 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 87  MVLNRFHHEIDFLVRSKTYXFISIGSLYF 1
           MVLN F      ++ +KT+  + IG+LYF
Sbjct: 166 MVLNSFILAKTLVIENKTFTSLMIGTLYF 194


>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
           protein C23H4.6 protein.
          Length = 1137

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 340 TEVDSAHTKVKELNXKVNQYNEEIKQYKADL 432
           TE      K++EL  +V   +EEIK+ +AD+
Sbjct: 317 TERSEVQKKLQELRDEVEVQDEEIKESRADV 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,636,334
Number of Sequences: 27780
Number of extensions: 88934
Number of successful extensions: 310
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)